Os05g0581700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0581700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366.77 | 0.9 | 3.91 | -0.354 | 0.49 | -1.67 | -0.0705 | -2.24 | -0.761 | 10.5 | 1015 | 4614 | -- | -- |
| 369.47 | 0.895 | 3.94 | -0.448 | 0.473 | -0.893 | 0.0461 | -- | -0.787 | 10.5 | 1014 | 4769 | -- | -- |
| 366.72 | 0.892 | 3.92 | -0.374 | 0.487 | -1.7 | -- | -2.34 | -0.758 | 10.4 | 1015 | 4612 | -- | -- |
| 369.43 | 0.895 | 3.94 | -0.443 | 0.487 | -0.885 | -- | -- | -0.785 | 10.6 | 1014 | 4770 | -- | -- |
| 381.24 | 0.909 | 3.92 | -0.366 | -- | -2.16 | -- | -3.25 | -0.757 | -- | 1016 | 4543 | -- | -- |
| 386.27 | 0.921 | 3.92 | -0.298 | 0.494 | -- | -0.0637 | -- | -0.671 | 10.3 | -- | -- | -- | -- |
| 386.28 | 0.92 | 3.92 | -0.3 | 0.494 | -- | -- | -- | -0.671 | 10.4 | -- | -- | -- | -- |
| 384.07 | 0.913 | 3.96 | -0.447 | -- | -0.885 | -- | -- | -0.792 | -- | 1014 | 4766 | -- | -- |
| 374.2 | 0.901 | 3.93 | -- | 0.498 | -0.822 | -- | -- | -0.728 | 10.6 | 1014 | 4616 | -- | -- |
| 401.22 | 0.936 | 3.93 | -0.308 | -- | -- | -- | -- | -0.673 | -- | -- | -- | -- | -- |
| 388.66 | 0.922 | 3.91 | -- | 0.496 | -- | -- | -- | -0.638 | 10.4 | -- | -- | -- | -- |
| 389.04 | 0.919 | 3.94 | -- | -- | -0.829 | -- | -- | -0.73 | -- | 1014 | 4634 | -- | -- |
| 403.73 | 0.938 | 3.92 | -- | -- | -- | -- | -- | -0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 358.31 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 9 |
| 8 | 363.21 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 22 | 19 |
| 16 | 363.78 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 39 | 364.52 | atmosphere | 1000 | 90 | > th | dose independent | sin | 2 | NA |
| 41 | 364.56 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 43 | 364.61 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 51 | 365.02 | atmosphere | 1000 | 90 | < th | dose dependent | sin | 3 | NA |
| 56 | 365.11 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 68 | 365.38 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 99 | 365.88 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 107 | 366.01 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 110 | 366.05 | atmosphere | 1000 | 10 | > th | dose independent | sin | 1 | NA |
| 114 | 366.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 120 | 366.24 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 122 | 366.24 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 22 | 19 |
| 125 | 366.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 134 | 366.35 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 136 | 366.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 137 | 366.37 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 144 | 366.43 | atmosphere | 1000 | 90 | < th | dose independent | sin | 2 | NA |
| 145 | 366.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 148 | 366.46 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 10 |
| 149 | 366.46 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 150 | 366.47 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 172 | 366.59 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 3 | 14 |
| 178 | 366.63 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 2 | 9 |
| 184 | 366.65 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 185 | 366.65 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 189 | 366.68 | temperature | 25 | 720 | < th | dose independent | sin | 9 | NA |
| 190 | 366.68 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 10 | 10 |
| 195 | 366.71 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 200 | 366.75 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 210 | 366.80 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 212 | 366.81 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 222 | 366.85 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 230 | 366.88 | wind | 5 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 233 | 366.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 242 | 366.94 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 247 | 366.96 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 11 |
| 254 | 366.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 6 |
| 261 | 367.03 | wind | 5 | 90 | > th | dose independent | rect. | 13 | 1 |
| 263 | 367.04 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 319 | 367.23 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 365 | 367.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 370 | 367.41 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 372 | 367.42 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 375 | 367.43 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 380 | 367.44 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 411 | 367.52 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 414 | 367.53 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 8 | NA |
| 417 | 367.54 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 435 | 367.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 436 | 367.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 6 |
| 437 | 367.58 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 464 | 367.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 488 | 367.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 4 |
| 489 | 367.72 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 5 | 12 |
| 537 | 367.83 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 568 | 367.90 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 625 | 368.03 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 639 | 368.06 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 644 | 368.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 646 | 368.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 675 | 368.11 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 697 | 368.14 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 707 | 368.16 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 21 | NA |
| 714 | 368.17 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 768 | 368.26 | wind | 9 | 14400 | > th | dose dependent | sin | 2 | NA |
| 773 | 368.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 859 | 368.42 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 22 | NA |
| 865 | 368.43 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 22 | NA |
| 869 | 368.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 918 | 368.53 | temperature | 20 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 924 | 368.55 | wind | 9 | 14400 | > th | dose independent | sin | 2 | NA |