Os05g0581600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Kv1.4 voltage-gated K+ channel family protein.
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Os05g0581600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Kv1.4 voltage-gated K+ channel family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.59 | 0.419 | 7.48 | 0.722 | 0.532 | -0.859 | -0.289 | 4.77 | 0.08 | 5.78 | 26.2 | 1008 | -- | -- |
| 85.08 | 0.43 | 7.6 | -0.217 | 0.617 | -0.299 | -0.394 | -- | -0.108 | 6.3 | 25.6 | 2594 | -- | -- |
| 79.77 | 0.416 | 7.48 | 0.723 | 0.528 | -0.859 | -- | 4.83 | 0.0815 | 5.89 | 26.2 | 1000 | -- | -- |
| 85.34 | 0.43 | 7.6 | -0.219 | 0.621 | -0.295 | -- | -- | -0.113 | 6.35 | 25.8 | 2625 | -- | -- |
| 89.24 | 0.44 | 7.5 | 0.717 | -- | -1.13 | -- | 5.72 | 0.103 | -- | 25.8 | 748 | -- | -- |
| 88.44 | 0.441 | 7.6 | -0.309 | 0.616 | -- | -0.333 | -- | -0.132 | 6.54 | -- | -- | -- | -- |
| 88.71 | 0.441 | 7.6 | -0.313 | 0.615 | -- | -- | -- | -0.13 | 6.61 | -- | -- | -- | -- |
| 97.31 | 0.459 | 7.6 | -0.129 | -- | -0.658 | -- | -- | -0.0425 | -- | 24.9 | 699 | -- | -- |
| 86.49 | 0.433 | 7.59 | -- | 0.609 | -0.334 | -- | -- | -0.0806 | 6.31 | 25.6 | 2605 | -- | -- |
| 108.41 | 0.487 | 7.61 | -0.299 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 91.3 | 0.447 | 7.59 | -- | 0.611 | -- | -- | -- | -0.0955 | 6.64 | -- | -- | -- | -- |
| 97.93 | 0.461 | 7.6 | -- | -- | -0.661 | -- | -- | -0.0522 | -- | 25 | 697 | -- | -- |
| 110.76 | 0.491 | 7.6 | -- | -- | -- | -- | -- | -0.0848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 15 | 76.66 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 21 | 77.08 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 23 | 77.14 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 25 | 77.16 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 53 | 77.56 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 67 | 77.84 | humidity | 80 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 70 | 77.87 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 105 | 78.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 124 | 78.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 138 | 78.52 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 159 | 78.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 169 | 78.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 175 | 78.72 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 9 |
| 192 | 78.84 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 215 | 78.93 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 239 | 79.02 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 12 | NA |
| 254 | 79.06 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 257 | 79.07 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 274 | 79.12 | humidity | 60 | 1440 | > th | dose dependent | rect. | 22 | 14 |
| 303 | 79.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 304 | 79.19 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 7 |
| 312 | 79.21 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 323 | 79.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 333 | 79.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 338 | 79.26 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 10 | NA |
| 384 | 79.33 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 386 | 79.34 | wind | 3 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 393 | 79.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 414 | 79.37 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 420 | 79.37 | humidity | 70 | 1440 | > th | dose dependent | sin | 5 | NA |
| 493 | 79.43 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 530 | 79.48 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 556 | 79.49 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 591 | 79.52 | wind | 3 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 661 | 79.58 | humidity | 90 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 662 | 79.58 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 733 | 79.64 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 4 | NA |
| 836 | 79.74 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 850 | 79.75 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 852 | 79.75 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 881 | 79.79 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 908 | 79.81 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 928 | 79.82 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 930 | 79.83 | wind | 3 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 947 | 79.84 | humidity | 90 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 960 | 79.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 974 | 79.86 | wind | 3 | 720 | > th | dose independent | rect. | 17 | 4 |