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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0581300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0312) R2 : 0.585
β1 : 1.43 (0.114) R2dD : 0.148 R2D : 0.135
β2 : 1.78 (0.0803) R2dC : 0.45 R2C : 0.441
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0665) R2dN8 : 0.00416 R2N8 : -0.00927
σ : 0.586
deviance : 156.48
__
_____
C
peak time of C : 19.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.52 0.571 5.16 1.5 1.83 0.56 0.303 -0.711 0.351 19.4 92.45 4554 -- --
148.37 0.567 5.17 1.41 1.84 0.622 0.457 -- 0.324 19.3 92.79 4602 -- --
147.76 0.566 5.16 1.5 1.83 0.559 -- -0.767 0.348 19.4 92.56 4556 -- --
148.75 0.568 5.16 1.41 1.84 0.602 -- -- 0.326 19.4 92.84 4609 -- --
318.51 0.831 5.12 1.84 -- 0.503 -- -1.12 0.301 -- 94.92 7090 -- --
156.13 0.586 5.2 1.44 1.78 -- 0.359 -- 0.122 19.4 -- -- -- --
156.48 0.586 5.2 1.43 1.78 -- -- -- 0.123 19.4 -- -- -- --
315.26 0.827 5.12 1.85 -- 0.969 -- -- 0.29 -- 94.9 15733 -- --
191.11 0.644 5.19 -- 1.84 1.06 -- -- 0.251 19.6 90 5310 -- --
324.95 0.842 5.16 1.4 -- -- -- -- 0.0937 -- -- -- -- --
210.15 0.678 5.24 -- 1.77 -- -- -- -0.0361 19.4 -- -- -- --
361.23 0.885 5.12 -- -- 0.997 -- -- 0.277 -- 87.26 5680 -- --
376.5 0.906 5.2 -- -- -- -- -- -0.0614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.83 temperature 10.0 270 > th dose dependent rect. 18 16
2 138.51 temperature 25.0 270 < th dose independent rect. 20 10
5 139.33 temperature 10.0 270 > th dose dependent rect. 17 9
7 139.47 temperature 20.0 90 > th dose independent rect. 18 9
8 139.55 atmosphere 1010.0 270 < th dose independent rect. 16 9
16 139.93 temperature 25.0 270 > th dose independent rect. 18 16
18 140.15 temperature 15.0 90 > th dose dependent rect. 19 8
24 140.40 temperature 30.0 90 < th dose dependent rect. 22 9
28 140.49 temperature 30.0 270 < th dose dependent rect. 20 10
40 140.97 temperature 20.0 30 > th dose independent rect. 7 20
44 141.01 temperature 15.0 270 > th dose independent rect. 15 11
46 141.04 humidity 60.0 90 > th dose dependent rect. 22 11
61 141.35 humidity 50.0 270 > th dose dependent rect. 20 10
72 141.54 temperature 15.0 10 > th dose dependent rect. 19 9
77 141.62 wind 1.0 30 > th dose dependent rect. 7 5
86 141.80 temperature 25.0 270 > th dose dependent rect. 19 14
91 141.88 temperature 25.0 270 < th dose independent sin 11 NA
104 142.03 radiation 20.0 10 < th dose independent rect. 23 10
120 142.28 wind 7.0 270 < th dose independent rect. 2 13
125 142.32 atmosphere 1010.0 10 < th dose independent rect. 18 10
131 142.37 temperature 20.0 30 > th dose independent rect. 19 18
134 142.38 atmosphere 1015.0 270 < th dose independent rect. 17 17
143 142.53 temperature 15.0 270 > th dose independent rect. 17 17
173 142.83 wind 7.0 270 < th dose independent rect. 10 20
190 142.96 temperature 25.0 270 > th dose independent sin 11 NA
192 142.97 wind 7.0 270 < th dose independent rect. 10 7
205 143.06 temperature 15.0 270 > th dose independent rect. 2 13
214 143.13 precipitation 0.1 270 < th dose independent rect. 20 10
215 143.13 precipitation 0.1 270 < th dose dependent rect. 20 10
220 143.16 wind 9.0 90 < th dose dependent rect. 3 14
227 143.24 temperature 20.0 30 > th dose independent rect. 9 18
232 143.28 temperature 15.0 1440 > th dose independent rect. 8 6
236 143.30 radiation 40.0 10 < th dose dependent rect. 23 10
245 143.35 wind 1.0 30 > th dose dependent rect. 1 11
247 143.37 wind 9.0 270 < th dose independent rect. 20 10
250 143.38 temperature 10.0 270 > th dose independent rect. 20 10
252 143.38 humidity 50.0 270 > th dose independent rect. 20 10
255 143.38 atmosphere 995.0 270 > th dose independent rect. 20 10
256 143.38 radiation 20.0 270 < th dose independent rect. 20 10
259 143.38 temperature 10.0 270 > th dose independent rect. 6 14
260 143.38 atmosphere 1015.0 270 < th dose independent rect. 6 14
269 143.45 radiation 40.0 270 < th dose dependent rect. 20 10
277 143.47 wind 9.0 270 < th dose dependent rect. 10 7
284 143.48 wind 9.0 10 < th dose dependent rect. 4 14
304 143.55 wind 9.0 270 < th dose dependent rect. 10 20
318 143.63 wind 1.0 270 > th dose independent rect. 16 10
325 143.66 radiation 30.0 270 < th dose independent rect. 15 11
328 143.67 precipitation 0.1 270 < th dose independent rect. 2 13
330 143.67 precipitation 0.1 270 < th dose dependent rect. 2 13
333 143.69 temperature 15.0 270 > th dose independent rect. 16 19
334 143.69 wind 1.0 30 > th dose dependent rect. 9 3
336 143.70 radiation 40.0 270 < th dose independent rect. 6 5
346 143.77 wind 1.0 10 > th dose independent rect. 7 6
351 143.81 humidity 60.0 270 > th dose independent rect. 6 5
375 143.89 temperature 15.0 270 > th dose independent rect. 10 7
376 143.89 temperature 15.0 1440 > th dose independent rect. 13 7
377 143.90 wind 7.0 10 < th dose independent rect. 4 14
382 143.92 precipitation 0.1 270 < th dose independent rect. 10 20
383 143.92 precipitation 0.1 270 < th dose dependent rect. 10 20
395 143.95 atmosphere 1015.0 90 < th dose dependent rect. 7 4
404 143.97 wind 9.0 1440 < th dose independent rect. 24 8
410 143.99 humidity 50.0 270 > th dose independent rect. 6 14
426 144.04 wind 5.0 10 < th dose independent rect. 23 10
439 144.08 atmosphere 1015.0 270 < th dose independent rect. 2 13
442 144.11 humidity 70.0 30 > th dose independent rect. 23 10
448 144.13 radiation 40.0 270 < th dose independent rect. 5 21
460 144.17 wind 1.0 10 > th dose independent rect. 7 16
470 144.20 humidity 50.0 270 > th dose independent rect. 17 17
479 144.22 wind 1.0 10 > th dose independent rect. 9 14
501 144.27 precipitation 0.1 10 < th dose independent rect. 13 18
503 144.27 precipitation 0.1 10 < th dose dependent rect. 13 18
519 144.33 wind 1.0 90 > th dose dependent rect. 18 18
527 144.35 radiation 40.0 270 < th dose independent rect. 17 18
529 144.35 temperature 10.0 270 > th dose dependent rect. 11 5
531 144.36 precipitation 0.1 270 < th dose independent rect. 10 7
535 144.36 precipitation 0.1 270 < th dose dependent rect. 10 7
542 144.38 precipitation 0.1 270 < th dose independent rect. 6 14
543 144.38 precipitation 0.1 270 < th dose dependent rect. 6 14
559 144.41 atmosphere 1015.0 270 < th dose independent rect. 10 7
563 144.41 temperature 10.0 270 > th dose dependent rect. 6 4
585 144.46 temperature 25.0 270 > th dose dependent rect. 4 4
592 144.48 radiation 1.0 90 > th dose independent rect. 12 18
602 144.50 wind 9.0 270 < th dose independent rect. 17 17
621 144.55 wind 9.0 270 < th dose independent rect. 15 10
624 144.56 wind 5.0 10 < th dose independent rect. 23 8
635 144.59 precipitation 0.1 270 < th dose independent rect. 6 4
637 144.59 precipitation 0.1 270 < th dose dependent rect. 6 4
648 144.60 temperature 25.0 90 < th dose dependent rect. 13 17
649 144.61 temperature 10.0 270 > th dose independent rect. 6 4
650 144.61 atmosphere 995.0 270 > th dose independent rect. 6 4
651 144.61 atmosphere 1015.0 270 < th dose independent rect. 6 4
655 144.61 temperature 10.0 270 > th dose independent rect. 10 20
661 144.63 radiation 20.0 90 < th dose dependent rect. 17 10
669 144.65 wind 9.0 270 < th dose independent rect. 6 4
671 144.65 atmosphere 1010.0 270 < th dose independent rect. 11 5
675 144.66 atmosphere 995.0 270 > th dose independent rect. 2 13
690 144.68 wind 9.0 10 < th dose dependent rect. 23 10
696 144.70 wind 9.0 10 < th dose independent rect. 13 18
698 144.70 humidity 50.0 270 > th dose independent rect. 16 19
709 144.73 temperature 15.0 1440 > th dose independent rect. 8 16
716 144.75 temperature 15.0 270 > th dose independent rect. 11 5
720 144.75 radiation 40.0 270 < th dose independent rect. 6 14
741 144.78 temperature 25.0 270 > th dose independent rect. 11 5
752 144.79 temperature 20.0 90 > th dose independent rect. 7 16
757 144.80 humidity 90.0 270 < th dose independent rect. 11 5
758 144.80 wind 9.0 270 < th dose independent rect. 6 14
788 144.86 temperature 10.0 10 > th dose independent rect. 7 6
791 144.86 atmosphere 995.0 10 > th dose independent rect. 7 6
792 144.86 atmosphere 1015.0 10 < th dose independent rect. 7 6
793 144.86 precipitation 0.1 10 < th dose independent rect. 7 6
794 144.86 radiation 1.0 270 > th dose independent rect. 10 7
797 144.86 temperature 10.0 10 > th dose independent rect. 13 18
799 144.86 precipitation 0.1 10 < th dose dependent rect. 7 6
810 144.89 humidity 90.0 270 < th dose independent rect. 10 7
821 144.91 precipitation 0.1 270 < th dose independent rect. 11 5
823 144.91 precipitation 0.1 30 < th dose independent rect. 23 8
827 144.91 atmosphere 1015.0 270 < th dose dependent rect. 7 1
828 144.91 precipitation 0.1 270 < th dose dependent rect. 11 5
829 144.91 precipitation 0.1 30 < th dose dependent rect. 23 8
834 144.92 radiation 1.0 10 > th dose independent rect. 7 6
840 144.93 atmosphere 1015.0 10 < th dose independent rect. 7 21
854 144.96 atmosphere 995.0 270 > th dose independent rect. 17 17
859 144.97 humidity 50.0 90 > th dose independent rect. 17 10
870 144.98 radiation 40.0 270 < th dose dependent rect. 15 11
879 145.00 humidity 50.0 10 > th dose independent rect. 7 6
896 145.01 precipitation 0.1 30 < th dose independent rect. 23 10
902 145.01 precipitation 0.1 30 < th dose dependent rect. 23 10
926 145.05 atmosphere 1015.0 10 < th dose independent rect. 19 17
952 145.10 atmosphere 995.0 1440 > th dose independent rect. 8 6
954 145.10 temperature 10.0 1440 > th dose independent rect. 14 18
960 145.11 wind 9.0 270 < th dose independent rect. 16 19
969 145.12 wind 9.0 270 < th dose dependent rect. 1 14
990 145.15 radiation 1.0 270 > th dose independent rect. 6 4