Os05g0580600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0580600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.16 | 0.423 | 8.13 | -0.0139 | 0.898 | 1.36 | -0.00803 | -0.136 | -0.103 | 2.53 | 29.48 | 77 | -- | -- |
| 81.18 | 0.42 | 8.13 | -0.0371 | 0.894 | 1.37 | -0.04 | -- | -0.105 | 2.51 | 29.4 | 76 | -- | -- |
| 81.16 | 0.42 | 8.13 | -0.0135 | 0.899 | 1.36 | -- | -0.137 | -0.102 | 2.54 | 29.4 | 76 | -- | -- |
| 81.18 | 0.42 | 8.13 | -0.0328 | 0.893 | 1.37 | -- | -- | -0.101 | 2.55 | 29.4 | 73 | -- | -- |
| 112.57 | 0.494 | 8.09 | 0.135 | -- | 2.24 | -- | 0.196 | 0.0643 | -- | 29.8 | 29 | -- | -- |
| 106.18 | 0.483 | 8.19 | -0.371 | 1.34 | -- | 0.128 | -- | -0.383 | 2.62 | -- | -- | -- | -- |
| 106.23 | 0.483 | 8.19 | -0.374 | 1.34 | -- | -- | -- | -0.384 | 2.61 | -- | -- | -- | -- |
| 112.53 | 0.494 | 8.09 | 0.187 | -- | 2.22 | -- | -- | 0.0726 | -- | 29.8 | 29 | -- | -- |
| 81.2 | 0.42 | 8.13 | -- | 0.89 | 1.38 | -- | -- | -0.0982 | 2.56 | 29.39 | 72 | -- | -- |
| 211.59 | 0.68 | 8.19 | -0.317 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 109.93 | 0.49 | 8.18 | -- | 1.33 | -- | -- | -- | -0.342 | 2.61 | -- | -- | -- | -- |
| 113.4 | 0.496 | 8.1 | -- | -- | 2.17 | -- | -- | 0.0437 | -- | 29.8 | 29 | -- | -- |
| 214.24 | 0.683 | 8.18 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 13 | 77.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 19 | 78.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 45 | 79.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 65 | 80.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 85 | 80.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 105 | 81.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 111 | 81.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 119 | 81.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 123 | 81.44 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 138 | 81.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 143 | 81.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 148 | 81.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 174 | 82.15 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 200 | 82.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 247 | 82.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 263 | 83.19 | temperature | 25 | 90 | < th | dose dependent | sin | 22 | NA |
| 324 | 83.90 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 335 | 83.96 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 341 | 83.98 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 20 |
| 373 | 84.25 | temperature | 15 | 10 | > th | dose dependent | sin | 22 | NA |
| 407 | 84.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 10 |
| 440 | 84.72 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 465 | 84.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 477 | 84.90 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 512 | 85.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 526 | 85.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 549 | 85.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 559 | 85.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 693 | 86.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 884 | 86.99 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 983 | 87.42 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 990 | 87.43 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |