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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0580500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rad21/Rec8 like protein, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.0306) R2 : 0.26
β1 : 0.92 (0.112) R2dD : 0.114 R2D : 0.114
β2 : 0.734 (0.0788) R2dC : 0.142 R2C : 0.139
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0594 (0.0652) R2dN8 : 0.00181 R2N8 : 0.00586
σ : 0.574
deviance : 150.37
__
_____
C
peak time of C : 19.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.45 0.545 5.02 0.796 0.748 -1.15 -0.354 1.71 -0.141 19.4 81.24 1473 -- --
136.05 0.543 5.01 0.913 0.79 -0.994 -0.625 -- -0.114 18.6 81.95 1284 -- --
134.76 0.541 5.02 0.801 0.743 -1.15 -- 1.71 -0.143 19.5 81.07 1481 -- --
136.72 0.545 5.01 0.922 0.779 -1.01 -- -- -0.125 18.8 81.38 1314 -- --
139.83 0.551 4.97 0.861 -- -0.834 -- 1.64 -0.125 -- 82 600 -- --
149.95 0.574 5 0.913 0.736 -- -0.419 -- -0.058 19.2 -- -- -- --
150.37 0.574 5 0.92 0.734 -- -- -- -0.0594 19.3 -- -- -- --
139.07 0.549 4.97 0.979 -- -0.886 -- -- -0.0698 -- 83.59 590 -- --
158.61 0.587 5.03 -- 0.71 -1 -- -- -0.215 18.4 81 1178 -- --
178.94 0.625 4.98 0.908 -- -- -- -- -0.0718 -- -- -- -- --
172.7 0.615 5.02 -- 0.725 -- -- -- -0.162 19.4 -- -- -- --
162.67 0.594 5 -- -- -0.925 -- -- -0.158 -- 81.13 682 -- --
200.67 0.661 5.01 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.63 humidity 60.0 720 > th dose dependent rect. 19 3
3 127.50 humidity 50.0 720 > th dose dependent rect. 19 12
24 129.86 precipitation 0.1 720 < th dose independent rect. 16 9
25 129.86 precipitation 0.1 720 < th dose dependent rect. 16 9
28 129.95 precipitation 0.1 720 < th dose independent rect. 13 15
30 129.95 precipitation 0.1 720 < th dose dependent rect. 13 15
42 130.67 humidity 80.0 720 > th dose independent rect. 18 4
60 131.15 humidity 90.0 720 < th dose dependent rect. 16 16
64 131.36 humidity 90.0 720 < th dose dependent rect. 16 12
86 131.63 precipitation 0.1 720 < th dose independent rect. 6 23
88 131.63 precipitation 0.1 720 < th dose dependent rect. 6 23
112 131.98 humidity 80.0 720 > th dose independent rect. 18 13
136 132.32 humidity 80.0 720 > th dose independent rect. 18 17
159 132.60 humidity 70.0 720 > th dose dependent sin 13 NA
161 132.61 humidity 70.0 720 > th dose dependent sin 11 NA
163 132.64 humidity 80.0 1440 > th dose independent sin 7 NA
172 132.74 humidity 90.0 720 < th dose dependent sin 12 NA
214 133.15 humidity 80.0 720 < th dose independent rect. 16 7
231 133.32 precipitation 0.1 720 < th dose independent rect. 3 16
232 133.32 precipitation 0.1 720 < th dose dependent rect. 3 16
253 133.43 precipitation 0.1 720 < th dose independent rect. 7 21
255 133.43 precipitation 0.1 720 < th dose dependent rect. 7 21
259 133.46 precipitation 0.1 90 < th dose independent rect. 7 22
260 133.46 precipitation 0.1 90 < th dose dependent rect. 7 22
280 133.60 humidity 90.0 720 < th dose independent rect. 17 1
282 133.61 humidity 80.0 720 > th dose independent sin 10 NA
288 133.64 temperature 15.0 90 > th dose independent rect. 7 22
301 133.71 humidity 80.0 720 > th dose dependent rect. 2 21
307 133.75 humidity 80.0 1440 < th dose independent sin 7 NA
340 133.89 humidity 80.0 720 > th dose independent sin 13 NA
342 133.89 humidity 80.0 720 > th dose dependent rect. 10 21
366 134.04 humidity 80.0 1440 > th dose independent rect. 13 21
374 134.09 humidity 80.0 1440 > th dose independent rect. 21 17
403 134.20 atmosphere 1005.0 90 > th dose independent rect. 7 22
413 134.22 precipitation 0.1 720 < th dose independent rect. 16 18
415 134.22 precipitation 0.1 720 < th dose dependent rect. 16 18
416 134.23 atmosphere 1015.0 90 < th dose dependent rect. 5 2
424 134.27 humidity 80.0 720 > th dose independent rect. 18 9
440 134.32 precipitation 0.1 720 < th dose independent rect. 22 23
441 134.32 precipitation 0.1 720 < th dose dependent rect. 22 23
476 134.44 wind 9.0 90 < th dose independent rect. 7 22
510 134.53 humidity 80.0 720 < th dose independent rect. 16 18
516 134.54 humidity 80.0 1440 < th dose independent rect. 18 20
525 134.58 humidity 80.0 1440 > th dose independent rect. 23 23
536 134.62 precipitation 0.1 720 < th dose independent rect. 7 16
539 134.62 precipitation 0.1 720 < th dose dependent rect. 7 16
544 134.64 humidity 80.0 1440 > th dose independent rect. 21 23
574 134.72 humidity 80.0 90 > th dose independent rect. 5 2
575 134.72 humidity 80.0 1440 > th dose independent rect. 6 22
586 134.74 humidity 70.0 90 > th dose dependent rect. 5 2
614 134.80 humidity 80.0 1440 > th dose independent no NA NA
627 134.82 humidity 80.0 1440 < th dose independent rect. 13 21
665 134.91 humidity 80.0 720 > th dose dependent no NA NA
673 134.92 humidity 80.0 720 > th dose dependent rect. 4 23
707 135.05 radiation 20.0 90 < th dose independent rect. 5 2
711 135.06 humidity 80.0 1440 < th dose independent rect. 21 16
741 135.13 atmosphere 1005.0 90 > th dose independent rect. 3 1
763 135.18 radiation 30.0 90 < th dose dependent rect. 5 2
770 135.21 wind 9.0 4320 < th dose independent rect. 6 2
787 135.25 humidity 80.0 1440 > th dose independent rect. 5 17
801 135.28 precipitation 0.1 720 < th dose independent sin 17 NA
803 135.28 humidity 80.0 1440 < th dose independent rect. 23 22
804 135.28 precipitation 0.1 720 < th dose dependent sin 17 NA
848 135.34 atmosphere 1005.0 30 > th dose dependent rect. 3 1
877 135.41 wind 7.0 90 < th dose independent rect. 5 2
879 135.41 temperature 10.0 90 > th dose independent rect. 5 2
881 135.41 temperature 30.0 90 < th dose independent rect. 5 2
882 135.41 humidity 50.0 90 > th dose independent rect. 5 2
884 135.41 atmosphere 995.0 90 > th dose independent rect. 5 2
885 135.41 atmosphere 1015.0 90 < th dose independent rect. 5 2
916 135.46 humidity 80.0 1440 < th dose independent rect. 6 21
928 135.48 precipitation 0.1 90 < th dose independent rect. 5 2
936 135.48 precipitation 0.1 90 < th dose dependent rect. 5 2
951 135.50 radiation 20.0 4320 < th dose independent rect. 23 7
958 135.52 humidity 80.0 1440 < th dose independent no NA NA
964 135.52 precipitation 0.1 720 < th dose independent rect. 22 21
969 135.52 precipitation 0.1 720 < th dose dependent rect. 22 21
991 135.56 wind 9.0 90 < th dose dependent rect. 5 2