Os05g0580100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0580100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.79 | 0.797 | 3.66 | 0.771 | 0.404 | -1.66 | -0.238 | -1.73 | 0.316 | 12.3 | 21.4 | 3295 | -- | -- |
| 288.06 | 0.79 | 3.6 | 0.906 | 0.315 | -1.31 | -0.295 | -- | 0.405 | 12.4 | 22.31 | 2295 | -- | -- |
| 288.01 | 0.79 | 3.66 | 0.767 | 0.404 | -1.66 | -- | -1.72 | 0.316 | 12.1 | 21.4 | 3293 | -- | -- |
| 288.46 | 0.791 | 3.6 | 0.891 | 0.321 | -1.32 | -- | -- | 0.407 | 12.1 | 22.33 | 2294 | -- | -- |
| 297.56 | 0.803 | 3.67 | 0.785 | -- | -1.67 | -- | -1.64 | 0.332 | -- | 21.5 | 3543 | -- | -- |
| 351.5 | 0.879 | 3.7 | 0.38 | 0.447 | -- | -0.295 | -- | -0.0666 | 12.3 | -- | -- | -- | -- |
| 351.82 | 0.878 | 3.7 | 0.367 | 0.449 | -- | -- | -- | -0.0687 | 12.1 | -- | -- | -- | -- |
| 294.64 | 0.799 | 3.6 | 0.912 | -- | -1.36 | -- | -- | 0.434 | -- | 22.46 | 2388 | -- | -- |
| 307.1 | 0.816 | 3.63 | -- | 0.333 | -1.07 | -- | -- | 0.254 | 11.8 | 22.7 | 2211 | -- | -- |
| 364.5 | 0.892 | 3.71 | 0.353 | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
| 355.38 | 0.882 | 3.71 | -- | 0.444 | -- | -- | -- | -0.11 | 12 | -- | -- | -- | -- |
| 313.74 | 0.825 | 3.64 | -- | -- | -1.12 | -- | -- | 0.267 | -- | 22.61 | 2315 | -- | -- |
| 367.79 | 0.895 | 3.72 | -- | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 283.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 3 | 284.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 18 | 286.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 21 |
| 23 | 286.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 30 | 286.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 34 | 287.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 49 | 287.51 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 51 | 287.52 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 103 | 288.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 111 | 288.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 140 | 288.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 10 |
| 151 | 289.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 153 | 289.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 157 | 289.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 226 | 289.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 460 | 290.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 556 | 290.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 610 | 290.73 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 714 | 291.06 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 785 | 291.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 850 | 291.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 973 | 291.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 23 |