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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0579200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AMP-dependent synthetase and ligase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0148) R2 : 0.00114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0225 (0.0312) R2dN8 : 0.00148 R2N8 : 0.00114
σ : 0.279
deviance : 35.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.49 0.274 4150 -25400 0.0397 1040000 0.12 -6360000 0.0253 6.57 995 90 -- --
35.34 0.279 2.89 -0.00357 0.0367 0.498 0.0344 -- 0.0237 8.03 995 90 -- --
34.5 0.274 4150 -25400 0.043 1040000 -- -6360000 0.0255 8.19 995 90 -- --
34 0.272 2.89 -0.00568 0.0438 1.27 -- -- 0.0254 8.47 994.7 113 -- --
34.61 0.274 4150 -25400 -- 1040000 -- -6360000 0.0259 -- 995 90 -- --
35.61 0.28 2.89 0.00235 0.033 -- -0.0216 -- 0.0226 9.72 -- -- -- --
35.61 0.279 2.89 0.00138 0.0336 -- -- -- 0.0225 9.29 -- -- -- --
34.11 0.272 2.89 -0.00597 -- 1.25 -- -- 0.0256 -- 994.7 123 -- --
34.01 0.272 2.89 -- 0.0439 1.27 -- -- 0.026 8.37 994.7 114 -- --
35.68 0.279 2.89 0.00123 -- -- -- -- 0.0226 -- -- -- -- --
35.61 0.279 2.89 -- 0.0336 -- -- -- 0.0223 9.29 -- -- -- --
34.11 0.272 2.89 -- -- 1.25 -- -- 0.0263 -- 994.7 122 -- --
35.68 0.279 2.89 -- -- -- -- -- 0.0225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.63 atmosphere 1000.0 10 < th dose independent rect. 5 1
9 30.63 atmosphere 1000.0 10 < th dose dependent rect. 5 1
63 32.97 atmosphere 995.0 30 > th dose independent rect. 3 23
70 33.14 wind 3.0 30 < th dose dependent rect. 2 1
71 33.15 wind 1.0 30 < th dose independent rect. 2 1
72 33.15 atmosphere 1005.0 30 > th dose dependent rect. 2 1
75 33.16 temperature 15.0 30 > th dose dependent rect. 2 1
78 33.17 temperature 25.0 30 < th dose independent rect. 2 1
79 33.17 humidity 80.0 30 > th dose independent rect. 2 1
84 33.18 temperature 20.0 30 > th dose independent rect. 2 1
85 33.18 atmosphere 995.0 30 > th dose independent rect. 21 23
91 33.19 temperature 10.0 30 > th dose independent rect. 2 1
94 33.19 humidity 50.0 30 > th dose independent rect. 2 1
97 33.19 atmosphere 995.0 30 > th dose independent rect. 2 1
98 33.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
99 33.19 atmosphere 1010.0 30 < th dose independent rect. 2 1
101 33.19 radiation 1.0 30 < th dose independent rect. 2 1
106 33.19 precipitation 0.1 30 < th dose independent rect. 2 1
107 33.19 temperature 10.0 30 > th dose independent rect. 3 23
108 33.19 humidity 50.0 30 > th dose dependent rect. 2 1
111 33.19 radiation 1.0 30 < th dose dependent rect. 2 1
116 33.19 precipitation 0.1 30 < th dose dependent rect. 2 1
127 33.24 atmosphere 1000.0 10 < th dose independent rect. 2 5
130 33.25 atmosphere 1015.0 30 < th dose dependent rect. 2 1
141 33.31 temperature 30.0 30 < th dose dependent rect. 2 1
157 33.46 temperature 20.0 10 < th dose independent rect. 11 1
163 33.46 humidity 90.0 90 > th dose independent rect. 10 1
165 33.46 precipitation 0.1 90 > th dose independent rect. 10 1
182 33.46 temperature 20.0 90 < th dose dependent rect. 10 1
183 33.46 temperature 20.0 10 < th dose dependent rect. 11 1
189 33.46 humidity 90.0 90 > th dose dependent rect. 10 1
191 33.46 precipitation 0.1 90 > th dose dependent rect. 10 1
222 33.49 temperature 10.0 90 > th dose dependent rect. 5 14
229 33.52 wind 1.0 30 > th dose independent rect. 2 1
244 33.55 temperature 10.0 10 > th dose dependent rect. 6 14
304 33.71 atmosphere 1000.0 720 > th dose independent rect. 21 12
333 33.79 wind 1.0 90 < th dose dependent rect. 5 1
345 33.82 wind 9.0 30 < th dose independent rect. 3 23
351 33.85 temperature 10.0 720 > th dose dependent rect. 3 6
368 33.89 atmosphere 1000.0 720 > th dose independent rect. 21 3
379 33.91 atmosphere 1000.0 720 > th dose independent rect. 3 6
380 33.91 atmosphere 1000.0 720 > th dose independent rect. 21 10
387 33.94 atmosphere 995.0 10 > th dose independent sin 9 NA
389 33.94 atmosphere 1000.0 720 > th dose independent rect. 19 14
392 33.94 temperature 10.0 30 > th dose dependent rect. 21 23
402 33.98 temperature 15.0 720 > th dose independent rect. 3 6
410 34.00 temperature 30.0 10 > th dose independent rect. 16 2
430 34.01 atmosphere 995.0 10 < th dose independent sin 9 NA
431 34.01 temperature 30.0 10 > th dose independent rect. 18 1
433 34.01 humidity 70.0 10 < th dose independent rect. 18 1
435 34.01 atmosphere 1000.0 10 < th dose independent rect. 17 1
473 34.01 temperature 15.0 720 > th dose independent rect. 21 12
477 34.01 atmosphere 1010.0 90 < th dose independent rect. 6 13
493 34.01 temperature 30.0 90 < th dose dependent rect. 10 1
494 34.01 atmosphere 1000.0 10 < th dose dependent rect. 17 1
502 34.01 temperature 30.0 90 < th dose dependent rect. 10 3
505 34.01 atmosphere 995.0 90 < th dose dependent rect. 16 23
506 34.02 atmosphere 995.0 90 < th dose independent sin 9 NA
525 34.02 wind 9.0 30 < th dose independent rect. 21 23
526 34.02 atmosphere 995.0 30 < th dose dependent sin 9 NA
567 34.03 radiation 1.0 4320 < th dose dependent rect. 21 1
737 34.04 atmosphere 1000.0 10 > th dose independent rect. 12 23
853 34.05 atmosphere 1010.0 90 > th dose independent rect. 10 1
872 34.05 atmosphere 1000.0 720 > th dose independent rect. 21 18
882 34.06 temperature 10.0 1440 > th dose independent rect. 21 1
885 34.06 temperature 30.0 1440 < th dose independent rect. 21 1
889 34.06 humidity 50.0 1440 > th dose independent rect. 21 1
895 34.06 atmosphere 1005.0 30 > th dose independent rect. 20 1
896 34.06 atmosphere 995.0 1440 > th dose independent rect. 21 1
897 34.06 radiation 1.0 1440 < th dose independent rect. 21 1
917 34.06 temperature 10.0 1440 > th dose independent rect. 22 23
944 34.07 wind 3.0 30 > th dose independent rect. 20 1
945 34.07 temperature 20.0 30 > th dose independent rect. 20 1
946 34.07 humidity 90.0 30 < th dose independent rect. 20 1
971 34.07 wind 1.0 30 > th dose dependent rect. 20 1
972 34.07 temperature 10.0 30 > th dose dependent rect. 20 1
974 34.07 humidity 90.0 30 < th dose dependent rect. 20 1
975 34.07 atmosphere 1005.0 10 > th dose dependent rect. 20 1
976 34.07 atmosphere 995.0 30 > th dose dependent rect. 20 1
988 34.08 wind 5.0 30 < th dose independent rect. 20 1
991 34.08 temperature 10.0 30 > th dose independent rect. 20 1
994 34.08 temperature 30.0 30 < th dose independent rect. 20 1
995 34.08 humidity 50.0 30 > th dose independent rect. 20 1
1000 34.08 atmosphere 995.0 30 > th dose independent rect. 20 1