FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0578600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase PG2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0511) R2 : 0.34
β1 : -1.01 (0.187) R2dD : 0.0462 R2D : 0.0245
β2 : -- (--) R2dC : -- R2C : --
β3 : 2 (0.143) R2dE : 0.281 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.394 (0.109) R2dN8 : 0.0262 R2N8 : 0.0185
σ : 0.955
deviance : 420.86
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.54
memory length : 101
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 23
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
402.43 0.943 3.83 -0.996 0.453 1.76 -2.56 3.61 -0.472 5.17 0.2918 84 22.2 --
414.63 0.948 3.83 -1.07 0.482 1.76 -0.589 -- -0.494 5.57 0.4378 79 22.4 --
409.73 0.943 3.82 -1.01 0.488 1.7 -- 1.43 -0.449 6.65 0.3043 79 22.9 --
413.58 0.947 3.83 -1.07 0.475 1.74 -- -- -0.469 7.64 0.4471 79 23.6 --
419.2 0.954 3.79 -1.13 -- 1.9 -- 1.52 -0.447 -- 0.421 79 22.6 --
468.15 1.01 3.83 -1.06 1.55 -- 0.172 -- -0.535 4.21 -- -- -- --
468.23 1.01 3.84 -1.06 1.56 -- -- -- -0.536 4.22 -- -- -- --
420.86 0.955 3.81 -1.01 -- 2 -- -- -0.394 -- 0.54 101 23 --
442.68 0.98 3.81 -- 0.442 1.78 -- -- -0.346 7.26 0.2407 99 23.3 --
599.05 1.14 3.84 -1 -- -- -- -- -0.494 -- -- -- -- --
497.97 1.04 3.81 -- 1.54 -- -- -- -0.418 4.24 -- -- -- --
449.53 0.987 3.81 -- -- 1.95 -- -- -0.351 -- 0.3 101 22.8 --
625.42 1.17 3.82 -- -- -- -- -- -0.384 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 400.83 humidity 50.0 90 > th dose dependent rect. 15 14
3 402.31 temperature 20.0 30 > th dose independent rect. 3 2
4 403.87 humidity 60.0 90 > th dose dependent rect. 17 12
5 404.08 humidity 80.0 90 > th dose dependent rect. 20 9
10 404.95 temperature 15.0 30 > th dose dependent rect. 3 2
16 405.80 humidity 80.0 30 > th dose dependent rect. 3 2
21 406.56 wind 3.0 30 < th dose dependent rect. 3 2
22 406.81 humidity 90.0 30 > th dose independent rect. 3 2
26 407.32 humidity 80.0 90 > th dose dependent rect. 23 6
27 407.35 temperature 20.0 90 > th dose independent rect. 24 5
31 407.66 radiation 1.0 90 < th dose dependent sin 5 NA
38 408.61 humidity 60.0 90 > th dose dependent rect. 11 18
44 408.93 radiation 1.0 90 > th dose independent sin 9 NA
48 409.07 wind 5.0 90 < th dose independent rect. 5 6
54 409.39 wind 9.0 90 < th dose dependent rect. 5 6
62 409.85 radiation 1.0 90 < th dose dependent rect. 3 2
63 409.91 temperature 20.0 270 > th dose independent rect. 24 2
66 410.14 wind 5.0 270 < th dose independent rect. 5 2
69 410.18 precipitation 0.1 90 < th dose independent rect. 5 22
70 410.18 precipitation 0.1 90 < th dose dependent rect. 5 22
73 410.29 humidity 80.0 90 > th dose dependent rect. 10 19
74 410.31 wind 7.0 90 < th dose independent rect. 5 22
76 410.40 radiation 1.0 30 < th dose independent rect. 3 14
78 410.42 radiation 1.0 30 < th dose independent rect. 3 3
91 410.80 wind 9.0 90 < th dose independent rect. 3 2
92 410.80 temperature 10.0 90 > th dose independent rect. 3 2
94 410.80 temperature 30.0 90 < th dose independent rect. 3 2
95 410.80 humidity 50.0 90 > th dose independent rect. 3 2
98 410.80 atmosphere 995.0 90 > th dose independent rect. 3 2
99 410.80 atmosphere 1010.0 90 < th dose independent rect. 3 2
101 410.80 radiation 20.0 90 < th dose independent rect. 3 2
104 410.80 temperature 10.0 90 > th dose independent rect. 5 22
119 411.24 precipitation 0.1 90 < th dose independent rect. 3 2
121 411.24 precipitation 0.1 90 < th dose dependent rect. 3 2
122 411.27 atmosphere 1015.0 90 < th dose dependent rect. 3 2
130 411.52 wind 9.0 270 < th dose dependent rect. 5 2
175 412.38 radiation 40.0 90 < th dose independent rect. 5 6
179 412.48 radiation 20.0 270 < th dose independent rect. 5 2
180 412.49 humidity 70.0 270 > th dose independent rect. 5 2
181 412.49 temperature 10.0 270 > th dose dependent rect. 5 2
184 412.56 precipitation 0.1 270 < th dose independent rect. 5 2
186 412.56 precipitation 0.1 270 < th dose dependent rect. 5 2
187 412.57 radiation 1.0 30 < th dose dependent rect. 3 14
190 412.61 temperature 15.0 90 > th dose independent rect. 5 6
195 412.67 temperature 10.0 270 > th dose independent rect. 5 2
197 412.67 temperature 30.0 270 < th dose independent rect. 5 2
198 412.67 humidity 50.0 270 > th dose independent rect. 5 2
200 412.67 atmosphere 995.0 270 > th dose independent rect. 5 2
201 412.67 atmosphere 1015.0 270 < th dose independent rect. 5 2
203 412.67 temperature 10.0 270 > th dose independent rect. 7 22
209 412.84 precipitation 0.1 90 < th dose independent rect. 5 6
210 412.84 precipitation 0.1 90 < th dose dependent rect. 5 6
213 412.89 wind 9.0 90 < th dose independent rect. 11 18
215 412.90 atmosphere 995.0 90 > th dose independent rect. 5 6
216 412.90 atmosphere 1015.0 90 < th dose independent rect. 5 6
217 412.90 temperature 10.0 90 > th dose independent rect. 11 18
228 413.21 wind 9.0 270 < th dose independent rect. 7 22
230 413.27 humidity 60.0 90 > th dose independent rect. 5 6
234 413.43 radiation 1.0 30 < th dose dependent rect. 3 11
256 413.77 radiation 40.0 270 < th dose dependent rect. 5 2
258 413.79 radiation 1.0 270 > th dose independent rect. 5 2
276 413.99 humidity 90.0 90 > th dose independent rect. 23 6
284 414.17 radiation 1.0 30 < th dose independent sin 4 NA
304 414.57 radiation 1.0 90 < th dose independent sin 8 NA
327 414.73 humidity 50.0 270 > th dose dependent rect. 5 2
328 414.73 wind 9.0 90 < th dose dependent rect. 11 18
345 415.30 humidity 90.0 90 > th dose independent rect. 21 8
353 415.43 radiation 1.0 30 < th dose independent rect. 3 11
404 416.40 atmosphere 995.0 90 > th dose independent rect. 11 18
405 416.42 atmosphere 1015.0 90 < th dose independent rect. 11 18
441 416.83 radiation 1.0 90 > th dose independent rect. 18 15
533 417.59 wind 1.0 90 > th dose independent rect. 3 2
537 417.64 atmosphere 995.0 30 > th dose independent rect. 5 22
544 417.67 temperature 10.0 90 > th dose dependent rect. 5 21
554 417.87 temperature 10.0 90 > th dose dependent rect. 5 6
560 418.06 temperature 30.0 90 < th dose independent rect. 11 18
565 418.10 atmosphere 995.0 90 > th dose dependent rect. 3 2
612 418.90 humidity 50.0 90 > th dose dependent rect. 5 6
623 419.08 radiation 1.0 90 > th dose independent rect. 18 17
631 419.20 humidity 90.0 90 > th dose independent rect. 10 19
679 419.43 atmosphere 995.0 270 > th dose dependent rect. 5 2
689 419.56 wind 1.0 90 > th dose independent rect. 5 4
735 419.78 radiation 40.0 90 < th dose dependent rect. 14 15
746 419.91 radiation 1.0 720 > th dose independent rect. 5 11
771 420.07 precipitation 0.1 90 < th dose independent rect. 11 18
773 420.07 precipitation 0.1 90 < th dose dependent rect. 11 18
786 420.15 wind 3.0 30 < th dose dependent rect. 11 18
799 420.28 radiation 40.0 90 < th dose independent rect. 5 22
820 420.51 atmosphere 1015.0 30 < th dose independent rect. 5 22
836 420.53 wind 1.0 30 > th dose independent rect. 5 22
840 420.55 wind 5.0 10 < th dose independent rect. 6 4
863 420.66 wind 3.0 30 < th dose dependent rect. 22 7
864 420.67 humidity 90.0 90 > th dose independent rect. 14 15
913 420.96 wind 3.0 30 < th dose dependent rect. 20 9
917 421.01 wind 9.0 10 < th dose dependent rect. 6 4
924 421.13 atmosphere 995.0 4320 > th dose independent rect. 3 3
935 421.20 wind 1.0 90 > th dose independent rect. 5 6