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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0578500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.34 (0.0338) R2 : 0.767
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.19 (0.136) R2dC : 0.11 R2C : 0.402
β3 : -1.61 (0.106) R2dE : 0.328 R2E : 0.613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.61 (0.0707) R2dN8 : 0.0492 R2N8 : 0.0252
σ : 0.629
deviance : 182.22
__
_____
C
peak time of C : 10.2
E
wheather : radiation
threshold : 6.155
memory length : 66
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.9 0.616 6.36 -0.543 1.18 -1.63 -1.19 -0.725 -0.67 10 6.048 70 -- --
172.7 0.612 6.36 -0.573 1.15 -1.65 -0.426 -- -0.676 9.99 5.874 69 -- --
173.17 0.613 6.35 -0.577 1.15 -1.64 -- 0.0969 -0.672 10.1 5.733 66 -- --
173.23 0.613 6.36 -0.59 1.17 -1.62 -- -- -0.674 10.1 5.805 66 -- --
200.29 0.659 6.4 -0.568 -- -2.31 -- 0.176 -0.735 -- 5.471 46 -- --
214.39 0.686 6.3 -0.569 2.92 -- -0.224 -- -0.551 11.5 -- -- -- --
214.61 0.686 6.3 -0.578 2.92 -- -- -- -0.552 11.5 -- -- -- --
200.56 0.66 6.4 -0.589 -- -2.32 -- -- -0.725 -- 5.454 46 -- --
182.22 0.629 6.34 -- 1.19 -1.61 -- -- -0.61 10.2 6.155 66 -- --
749.76 1.28 6.37 -0.656 -- -- -- -- -0.584 -- -- -- -- --
223.4 0.699 6.28 -- 2.93 -- -- -- -0.488 11.5 -- -- -- --
209.49 0.674 6.38 -- -- -2.33 -- -- -0.664 -- 5.763 50 -- --
761.11 1.29 6.35 -- -- -- -- -- -0.511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.97 radiation 10 90 < th dose dependent rect. 9 23
2 177.18 radiation 10 90 < th dose dependent no NA NA
3 177.20 radiation 10 90 < th dose dependent rect. 1 23
4 177.23 radiation 10 90 < th dose dependent rect. 15 23
6 177.68 radiation 10 90 < th dose dependent rect. 12 23
9 178.07 radiation 10 90 < th dose dependent rect. 17 23
10 178.44 radiation 10 90 < th dose dependent rect. 20 23
15 178.98 humidity 60 10 > th dose dependent rect. 1 23
21 179.45 radiation 10 90 < th dose dependent rect. 5 23
22 179.46 radiation 10 90 < th dose dependent rect. 7 23
29 181.10 humidity 70 90 > th dose independent rect. 11 12
40 181.85 radiation 1 30 < th dose independent rect. 1 23
48 182.44 humidity 60 10 > th dose dependent rect. 7 23
54 182.91 temperature 20 30 > th dose dependent rect. 5 13
58 183.16 temperature 25 30 > th dose independent rect. 24 18
59 183.19 humidity 90 10 < th dose dependent rect. 24 21
60 183.21 humidity 60 10 > th dose dependent rect. 11 23
62 183.24 humidity 50 90 > th dose dependent rect. 11 12
65 183.28 humidity 60 10 > th dose dependent rect. 17 23
68 183.39 humidity 60 10 > th dose dependent rect. 9 23
70 183.40 humidity 60 10 > th dose dependent rect. 21 23
71 183.50 humidity 60 10 > th dose dependent no NA NA
72 183.51 radiation 1 90 < th dose independent rect. 20 23
79 183.72 temperature 20 10 > th dose dependent rect. 5 16
80 183.79 temperature 10 10 > th dose dependent rect. 23 23
86 183.97 temperature 25 10 > th dose dependent rect. 12 23
88 184.10 humidity 60 10 > th dose dependent rect. 13 23
92 184.13 humidity 50 10 > th dose dependent sin 19 NA
99 184.29 humidity 90 10 < th dose dependent rect. 6 15
105 184.39 humidity 60 10 > th dose dependent rect. 15 23
112 184.44 temperature 20 10 > th dose dependent rect. 24 22
133 184.79 humidity 90 10 < th dose dependent sin 19 NA
136 184.83 humidity 90 10 < th dose dependent rect. 6 22
139 184.86 humidity 80 10 < th dose dependent sin 17 NA
141 184.88 temperature 25 10 > th dose dependent rect. 13 20
146 184.94 temperature 20 30 > th dose dependent rect. 24 18
149 184.97 radiation 1 90 > th dose independent no NA NA
150 184.97 radiation 1 90 > th dose independent rect. 4 15
201 185.07 radiation 1 90 < th dose independent no NA NA
204 185.08 radiation 1 90 < th dose independent rect. 9 23
220 185.18 radiation 1 90 < th dose independent rect. 11 23
248 185.45 humidity 90 10 < th dose dependent rect. 6 20
259 185.51 humidity 90 30 < th dose dependent rect. 19 23
269 185.57 humidity 70 90 > th dose independent sin 18 NA
283 185.62 temperature 25 30 > th dose dependent rect. 19 23
289 185.70 radiation 1 90 < th dose independent rect. 15 23
296 185.75 humidity 80 10 < th dose dependent rect. 12 21
325 186.02 humidity 90 10 < th dose dependent no NA NA
326 186.02 humidity 90 10 < th dose dependent rect. 3 23
330 186.08 radiation 1 90 < th dose independent rect. 17 23
338 186.12 temperature 25 10 > th dose dependent rect. 10 23
340 186.13 temperature 20 10 > th dose dependent rect. 5 21
360 186.30 humidity 50 90 > th dose dependent rect. 9 14
391 186.54 humidity 90 10 < th dose dependent rect. 13 23
424 186.73 humidity 90 10 < th dose dependent rect. 10 23
429 186.79 humidity 80 90 < th dose dependent rect. 12 23
446 186.90 humidity 70 90 > th dose independent rect. 11 8
448 186.90 humidity 60 90 > th dose dependent rect. 11 8
485 187.16 temperature 25 10 > th dose dependent no NA NA
486 187.16 temperature 25 10 > th dose dependent rect. 3 23
489 187.18 radiation 1 90 < th dose independent rect. 7 23
534 187.35 temperature 30 270 < th dose independent rect. 9 11
652 187.59 temperature 25 10 > th dose dependent sin 18 NA
725 187.95 humidity 90 10 < th dose dependent rect. 15 23
737 188.03 humidity 70 30 > th dose independent rect. 1 23
743 188.05 temperature 25 10 > th dose dependent rect. 15 23
747 188.06 humidity 60 90 > th dose dependent rect. 9 10
774 188.15 humidity 70 30 > th dose independent rect. 10 20
775 188.15 humidity 60 10 > th dose dependent rect. 11 9
805 188.31 humidity 80 10 < th dose dependent rect. 12 17
818 188.37 temperature 25 10 > th dose independent rect. 24 21
824 188.39 humidity 70 90 < th dose independent sin 18 NA
883 188.63 temperature 30 90 < th dose independent rect. 11 12
890 188.65 humidity 70 90 > th dose independent rect. 9 10
909 188.71 humidity 80 10 < th dose dependent rect. 12 9
933 188.80 temperature 30 270 < th dose independent rect. 24 23
996 188.99 temperature 30 270 < th dose independent rect. 22 23