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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0577500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Flagellar calcium-binding protein (calflagin) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0456) R2 : 0.344
β1 : 1.18 (0.168) R2dD : 0.0741 R2D : 0.0411
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.43 (0.168) R2dE : 0.304 R2E : 0.267
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0528 (0.0974) R2dN8 : 0.000559 R2N8 : 0.0014
σ : 0.853
deviance : 335.42
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 86
memory length : 1616
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.28 0.847 4.49 1.22 0.31 -2.35 -1.59 0.114 -0.058 6.9 86 1559 -- --
325.3 0.84 4.49 1.21 0.313 -2.34 -1.6 -- -0.0602 6.89 86 1559 -- --
329.25 0.845 4.48 1.2 0.443 -2.38 -- 0.185 -0.0589 4.73 85.72 1514 -- --
329.26 0.845 4.49 1.18 0.452 -2.37 -- -- -0.0589 4.71 86 1510 -- --
335.43 0.853 4.49 1.21 -- -2.44 -- 0.321 -0.0441 -- 86 1614 -- --
471.15 1.02 4.48 0.907 0.469 -- -1.62 -- -0.0272 5.68 -- -- -- --
476.13 1.02 4.48 0.894 0.481 -- -- -- -0.0222 4.46 -- -- -- --
335.42 0.853 4.49 1.18 -- -2.43 -- -- -0.0528 -- 86 1616 -- --
362.25 0.886 4.5 -- 0.442 -2.24 -- -- -0.103 4.77 91.21 1525 -- --
488.52 1.03 4.48 0.913 -- -- -- -- -0.00949 -- -- -- -- --
497.19 1.04 4.5 -- 0.498 -- -- -- -0.122 4.41 -- -- -- --
367.21 0.893 4.5 -- -- -2.39 -- -- -0.0775 -- 91.88 1635 -- --
510.49 1.05 4.51 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.78 humidity 70 1440 > th dose independent rect. 18 21
4 321.67 humidity 70 1440 < th dose independent rect. 18 21
5 322.38 humidity 80 1440 < th dose independent rect. 7 13
8 323.07 humidity 60 1440 > th dose dependent rect. 9 12
13 323.47 humidity 80 1440 > th dose independent rect. 7 13
21 323.90 humidity 60 1440 > th dose dependent rect. 11 3
24 324.05 humidity 60 1440 > th dose dependent sin 22 NA
49 324.95 humidity 80 1440 < th dose dependent rect. 18 21
50 325.02 humidity 60 1440 > th dose dependent rect. 9 6
63 325.39 humidity 80 1440 < th dose independent sin 0 NA
99 326.23 humidity 80 1440 < th dose dependent rect. 23 16
113 326.49 humidity 80 1440 < th dose independent rect. 7 9
117 326.52 humidity 80 1440 < th dose dependent rect. 7 8
126 326.56 humidity 80 1440 > th dose independent sin 0 NA
149 327.04 humidity 80 1440 < th dose dependent sin 4 NA
175 327.42 humidity 90 1440 < th dose dependent sin 0 NA
182 327.54 humidity 90 1440 < th dose dependent rect. 8 14
204 327.74 humidity 90 1440 < th dose dependent rect. 3 19
220 327.84 humidity 70 1440 > th dose independent rect. 9 23
274 328.26 humidity 70 1440 > th dose independent rect. 2 22
277 328.27 humidity 70 1440 > th dose independent rect. 4 23
303 328.30 humidity 70 1440 > th dose independent rect. 22 23
306 328.31 humidity 70 1440 > th dose independent no NA NA
379 328.57 humidity 70 1440 > th dose independent rect. 9 18
534 329.60 humidity 70 1440 > th dose independent rect. 9 6
571 329.86 humidity 90 1440 < th dose dependent no NA NA
623 330.16 humidity 70 1440 > th dose independent rect. 13 23
691 330.71 humidity 70 1440 < th dose independent rect. 9 23
711 330.83 humidity 70 1440 < th dose independent no NA NA
772 330.86 humidity 70 1440 > th dose independent rect. 2 13
785 330.87 humidity 70 1440 > th dose independent rect. 22 17
839 331.15 humidity 70 1440 < th dose independent rect. 9 6
851 331.22 humidity 90 1440 < th dose dependent rect. 13 23
953 331.80 humidity 70 1440 < th dose independent rect. 13 23