Os05g0577000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0577000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.89 | 0.508 | 7.51 | -0.789 | 1.09 | 1 | 1.11 | -0.354 | -0.106 | 16.7 | 20.51 | 881 | -- | -- |
| 117.23 | 0.504 | 7.5 | -0.722 | 1.08 | 1.04 | 1.12 | -- | -0.0914 | 16.7 | 20.55 | 880 | -- | -- |
| 119.99 | 0.51 | 7.51 | -0.802 | 1.1 | 1.02 | -- | -0.39 | -0.109 | 16.7 | 20.6 | 967 | -- | -- |
| 120.5 | 0.511 | 7.5 | -0.742 | 1.11 | 1.08 | -- | -- | -0.0966 | 16.7 | 20.59 | 967 | -- | -- |
| 175.8 | 0.618 | 7.49 | -0.781 | -- | 1.03 | -- | -0.191 | -0.127 | -- | 20.8 | 479 | -- | -- |
| 147.42 | 0.569 | 7.45 | -0.317 | 1.08 | -- | 1.3 | -- | 0.141 | 17.1 | -- | -- | -- | -- |
| 151.66 | 0.577 | 7.45 | -0.317 | 1.09 | -- | -- | -- | 0.147 | 17.2 | -- | -- | -- | -- |
| 175.61 | 0.617 | 7.49 | -0.721 | -- | 1.05 | -- | -- | -0.125 | -- | 20.7 | 472 | -- | -- |
| 133.22 | 0.538 | 7.51 | -- | 1.06 | 0.875 | -- | -- | -0.0308 | 16.8 | 20.7 | 860 | -- | -- |
| 213.68 | 0.683 | 7.43 | -0.355 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 154.3 | 0.581 | 7.44 | -- | 1.09 | -- | -- | -- | 0.183 | 17.2 | -- | -- | -- | -- |
| 159.88 | 0.589 | 7.47 | -- | -- | 0.867 | -- | -- | -0.0354 | -- | 26.48 | 277 | -- | -- |
| 217 | 0.688 | 7.42 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 3 | 111.35 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 5 | 111.49 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 7 | 111.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 9 | 111.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 39 | 113.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 96 | 115.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 227 | 118.74 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 22 |
| 243 | 118.94 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 246 | 118.97 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 250 | 119.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 265 | 119.20 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 266 | 119.21 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 283 | 119.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 286 | 119.37 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 21 |
| 289 | 119.40 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 291 | 119.41 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 293 | 119.43 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 298 | 119.48 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 300 | 119.48 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 306 | 119.53 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 325 | 119.66 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 338 | 119.71 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 21 |
| 347 | 119.76 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 362 | 119.82 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 399 | 119.94 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 414 | 120.00 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 449 | 120.17 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 465 | 120.26 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 471 | 120.28 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 17 |
| 517 | 120.47 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 573 | 120.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 20 |
| 608 | 120.84 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 615 | 120.86 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 621 | 120.89 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 632 | 120.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 674 | 121.16 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 686 | 121.20 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 687 | 121.20 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 816 | 121.80 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 817 | 121.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 824 | 121.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 826 | 121.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 829 | 121.86 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 870 | 121.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 878 | 122.00 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 9 |
| 915 | 122.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 940 | 122.16 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 979 | 122.27 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |