Os05g0576800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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Os05g0576800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.67 | 0.384 | 8.36 | 0.962 | 1.28 | -1.95 | -0.867 | -0.749 | 0.0965 | 4.74 | 23.9 | 1304 | -- | -- |
| 67.27 | 0.382 | 8.36 | 0.883 | 1.26 | -1.81 | -0.804 | -- | 0.0971 | 4.8 | 24.1 | 1251 | -- | -- |
| 68.56 | 0.386 | 8.36 | 0.933 | 1.27 | -1.94 | -- | -0.551 | 0.0979 | 4.79 | 23.82 | 1275 | -- | -- |
| 68.86 | 0.386 | 8.37 | 0.857 | 1.27 | -1.84 | -- | -- | 0.0781 | 4.84 | 24.02 | 1245 | -- | -- |
| 151.75 | 0.574 | 8.39 | 0.902 | -- | -2.02 | -- | -0.301 | 0.0479 | -- | 25.52 | 1211 | -- | -- |
| 110.24 | 0.492 | 8.29 | 1.38 | 1.36 | -- | -0.946 | -- | 0.426 | 4.58 | -- | -- | -- | -- |
| 112.62 | 0.497 | 8.29 | 1.39 | 1.35 | -- | -- | -- | 0.431 | 4.6 | -- | -- | -- | -- |
| 151.78 | 0.574 | 8.4 | 0.849 | -- | -1.99 | -- | -- | 0.0278 | -- | 25.65 | 1200 | -- | -- |
| 79.93 | 0.416 | 8.4 | -- | 1.26 | -2.07 | -- | -- | -0.0729 | 4.76 | 22.76 | 2667 | -- | -- |
| 209.68 | 0.677 | 8.3 | 1.44 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 163.55 | 0.598 | 8.33 | -- | 1.38 | -- | -- | -- | 0.276 | 4.58 | -- | -- | -- | -- |
| 162.54 | 0.594 | 8.44 | -- | -- | -2.14 | -- | -- | -0.148 | -- | 24.94 | 2648 | -- | -- |
| 264.52 | 0.759 | 8.34 | -- | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 14 | 65.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 18 | 65.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 42 | 66.01 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 78 | 66.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 88 | 66.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 93 | 66.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 130 | 66.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 220 | 67.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 228 | 67.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 317 | 67.48 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 366 | 67.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 380 | 67.61 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 383 | 67.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 384 | 67.62 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 413 | 67.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 468 | 67.81 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 475 | 67.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 519 | 67.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 547 | 67.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 633 | 68.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 660 | 68.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 745 | 68.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 902 | 68.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 932 | 68.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 987 | 68.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |