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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0575800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0513) R2 : 0.297
β1 : -0.16 (0.193) R2dD : 0.000909 R2D : -0.0699
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.98 (0.315) R2dE : 0.198 R2E : -0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.9 (1.21) R2dD*E : 0.205 R2D*E : 0.00439
γ1 : -1.01 (0.108) R2dN8 : 0.179 R2N8 : 0.0388
σ : 0.917
deviance : 387.95
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 75.95
memory length : 4121
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.3
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
386.96 0.924 3.87 -0.139 0.207 2.35 0.857 9.58 -1.03 16.8 77.03 4122 20.3 0.92
419.78 0.954 3.79 -0.142 0.248 2.18 0.365 -- -1.22 16.5 92.17 15249 20.5 1.13
387.42 0.917 3.85 -0.178 0.222 2.73 -- 10.6 -1.01 17.1 76.12 4126 20.2 1.08
413.85 0.947 3.8 -0.106 0.293 2.05 -- -- -1.2 17.1 102.7 15619 20.7 1.18
387.95 0.917 3.84 -0.16 -- 2.98 -- 11.9 -1.01 -- 75.95 4121 20.3 1
495 1.04 3.71 -0.923 0.0579 -- 0.391 -- -0.756 14.1 -- -- -- --
495.56 1.04 3.7 -0.911 0.0617 -- -- -- -0.753 15.1 -- -- -- --
418.26 0.953 3.81 -0.121 -- 2.07 -- -- -1.19 -- 98.28 15621 20.7 1.35
412.95 0.946 3.82 -- 0.356 2.39 -- -- -1.22 17.5 109.4 15636 20.7 1.27
495.78 1.04 3.7 -0.914 -- -- -- -- -0.755 -- -- -- -- --
517.44 1.06 3.68 -- 0.0797 -- -- -- -0.652 15.1 -- -- -- --
418.66 0.953 3.8 -- -- 2.08 -- -- -1.19 -- 98.2 15622 20.7 1.25
517.8 1.06 3.68 -- -- -- -- -- -0.653 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 408.97 temperature 30 14400 > th dose independent rect. 8 1
15 408.97 humidity 80 4320 < th dose dependent rect. 20 2
16 409.08 temperature 30 14400 < th dose independent rect. 23 10
17 409.12 temperature 30 14400 < th dose independent rect. 20 13
21 409.26 temperature 30 14400 < th dose independent rect. 3 6
23 409.36 temperature 30 14400 < th dose independent rect. 7 2
30 409.63 temperature 30 4320 > th dose independent rect. 8 4
44 409.87 temperature 30 14400 > th dose dependent rect. 8 1
58 409.92 temperature 30 4320 > th dose dependent rect. 11 1
59 410.00 temperature 30 4320 < th dose independent rect. 2 10
61 410.04 temperature 30 4320 < th dose independent rect. 4 8
84 410.14 temperature 30 4320 > th dose dependent rect. 8 5
116 410.21 atmosphere 995 30 > th dose dependent rect. 8 23
117 410.23 temperature 30 4320 < th dose independent rect. 8 4
162 411.04 temperature 30 4320 < th dose independent rect. 10 1
168 411.11 temperature 30 4320 > th dose independent sin 9 NA
200 411.58 temperature 30 4320 > th dose dependent sin 8 NA
202 411.65 temperature 30 4320 < th dose independent sin 9 NA
269 413.38 atmosphere 995 30 > th dose dependent rect. 17 23
277 414.61 humidity 60 14400 > th dose independent rect. 18 14
304 415.59 humidity 60 14400 > th dose independent rect. 18 12
309 415.90 humidity 60 14400 > th dose independent rect. 18 4
311 415.92 humidity 50 14400 < th dose dependent rect. 17 17
334 416.49 humidity 60 14400 > th dose independent rect. 18 6
336 416.52 humidity 60 14400 > th dose independent rect. 18 8
343 416.66 humidity 50 14400 < th dose dependent rect. 16 19
353 417.11 atmosphere 995 10 > th dose dependent rect. 15 23
440 418.28 atmosphere 995 270 > th dose dependent rect. 15 22
443 418.39 humidity 60 14400 < th dose independent rect. 18 14
447 418.66 humidity 60 14400 < th dose independent rect. 18 1
466 418.94 temperature 30 4320 > th dose dependent no NA NA
591 419.24 humidity 50 14400 > th dose independent rect. 17 16
596 419.43 humidity 50 14400 < th dose independent rect. 17 17
597 419.58 humidity 60 14400 < th dose independent rect. 18 4
615 419.75 atmosphere 995 270 > th dose dependent rect. 22 13
618 419.90 humidity 70 14400 > th dose dependent rect. 21 1
619 419.91 temperature 30 4320 < th dose independent rect. 17 1
638 420.24 humidity 70 14400 > th dose dependent rect. 20 3
640 420.30 humidity 80 14400 < th dose independent rect. 14 18
641 420.32 humidity 60 14400 < th dose dependent rect. 17 3
659 420.46 humidity 50 14400 > th dose dependent rect. 21 1
664 420.53 atmosphere 995 10 > th dose dependent rect. 22 23
668 420.66 wind 1 14400 < th dose independent rect. 2 1
673 420.75 humidity 80 14400 > th dose independent rect. 17 6
674 420.84 humidity 80 14400 < th dose independent rect. 16 11
677 420.88 humidity 80 14400 > th dose independent rect. 16 11
691 421.07 humidity 80 14400 > th dose independent rect. 16 16
723 421.23 humidity 50 14400 < th dose dependent rect. 16 1
774 421.56 humidity 80 14400 > th dose independent rect. 14 18
778 421.60 humidity 80 14400 > th dose independent rect. 17 20
785 421.70 atmosphere 1015 10 < th dose dependent rect. 21 23
805 421.90 humidity 50 14400 > th dose independent rect. 16 18
823 421.94 atmosphere 1015 90 < th dose dependent rect. 11 23
857 422.22 humidity 70 14400 > th dose dependent rect. 18 8
868 422.31 humidity 80 14400 < th dose independent sin 15 NA
870 422.32 humidity 80 14400 < th dose independent rect. 16 21
878 422.38 atmosphere 1015 270 < th dose dependent sin 8 NA
880 422.38 humidity 70 4320 > th dose dependent rect. 15 10
897 422.53 atmosphere 1015 10 < th dose dependent rect. 1 23
900 422.56 wind 1 14400 > th dose independent rect. 2 1
901 422.59 humidity 80 14400 > th dose independent sin 15 NA
912 422.68 atmosphere 995 270 > th dose dependent sin 8 NA
924 422.75 humidity 80 4320 > th dose independent rect. 18 1
937 422.86 humidity 50 14400 < th dose independent rect. 16 19
939 422.87 humidity 80 4320 < th dose independent rect. 17 2
957 423.01 temperature 30 4320 > th dose independent rect. 16 2
959 423.01 atmosphere 1015 10 < th dose dependent rect. 13 23