Os05g0575500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0575500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.52 | 0.386 | 8.34 | -0.919 | 0.269 | -0.941 | -1.05 | -0.737 | -0.3 | 14.1 | 26.3 | 4 | -- | -- |
| 68.04 | 0.387 | 8.35 | -1.04 | 0.282 | -0.894 | -0.77 | -- | -0.326 | 14.1 | 26.3 | 4 | -- | -- |
| 70.25 | 0.393 | 8.35 | -1.07 | 0.293 | -0.879 | -- | 0.0758 | -0.329 | 13.8 | 26.1 | 2 | -- | -- |
| 70.26 | 0.393 | 8.35 | -1.06 | 0.292 | -0.884 | -- | -- | -0.327 | 13.8 | 26.1 | 2 | -- | -- |
| 74.01 | 0.401 | 8.37 | -1.09 | -- | -1.09 | -- | 0.00657 | -0.381 | -- | 26.7 | 2 | -- | -- |
| 79.99 | 0.419 | 8.31 | -0.834 | 0.515 | -- | -0.722 | -- | -0.132 | 13.9 | -- | -- | -- | -- |
| 82 | 0.424 | 8.31 | -0.856 | 0.514 | -- | -- | -- | -0.136 | 13.8 | -- | -- | -- | -- |
| 73.96 | 0.401 | 8.37 | -1.13 | -- | -1.11 | -- | -- | -0.386 | -- | 26.7 | 2 | -- | -- |
| 97.41 | 0.462 | 8.31 | -- | 0.414 | -0.488 | -- | -- | -0.133 | 13.9 | 25.9 | 2 | -- | -- |
| 98.03 | 0.463 | 8.31 | -0.877 | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
| 101.33 | 0.471 | 8.29 | -- | 0.529 | -- | -- | -- | -0.0409 | 13.8 | -- | -- | -- | -- |
| 105.18 | 0.479 | 8.33 | -- | -- | -0.795 | -- | -- | -0.201 | -- | 26.7 | 2 | -- | -- |
| 118.33 | 0.508 | 8.29 | -- | -- | -- | -- | -- | -0.0505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 3 | 65.58 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 6 | 65.63 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 11 |
| 8 | 65.65 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 12 | 65.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 56 | 66.20 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 76 | 66.33 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 138 | 66.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 180 | 67.11 | temperature | 20 | 30 | > th | dose dependent | sin | 11 | NA |
| 269 | 67.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 285 | 67.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 306 | 67.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 425 | 68.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 439 | 68.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 442 | 68.32 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 495 | 68.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 500 | 68.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 521 | 68.52 | temperature | 30 | 90 | < th | dose dependent | sin | 11 | NA |
| 536 | 68.54 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 541 | 68.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 555 | 68.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 570 | 68.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 571 | 68.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 575 | 68.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 613 | 68.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 707 | 68.99 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 731 | 69.07 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 880 | 69.41 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 933 | 69.53 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 939 | 69.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |