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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0574800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.66 (0.0483) R2 : 0.815
β1 : 2.19 (0.177) R2dD : 0.0645 R2D : 0.0725
β2 : 3.6 (0.164) R2dC : 0.336 R2C : 0.597
β3 : 2.22 (0.165) R2dE : 0.128 R2E : 0.406
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.285 (0.103) R2dN8 : 0.00425 R2N8 : 0.013
σ : 0.902
deviance : 374.71
__
_____
C
peak time of C : 17.1
E
wheather : wind
threshold : 7.322
memory length : 319
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.45
open length of G : 20.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.07 0.884 6.63 1.98 3.67 2.48 -2.84 4.15 -0.27 17.2 6.899 272 6.82 20.1
374.66 0.902 6.67 2.17 3.68 2.19 -0.695 -- -0.282 17.2 7.203 305 6.44 20.3
367.34 0.893 6.66 2.14 3.51 2.45 -- 1.97 -0.268 17.1 7.5 296 6.61 20.2
374.71 0.902 6.66 2.19 3.6 2.22 -- -- -0.285 17.1 7.322 319 6.45 20.1
444.16 0.982 6.61 2.41 -- 4.54 -- -0.27 -0.229 -- 53.67 539 4.16 18.7
497.56 1.05 6.73 2.38 5.1 -- 0.0209 -- -0.387 17.6 -- -- -- --
497.56 1.04 6.73 2.38 5.1 -- -- -- -0.387 17.6 -- -- -- --
437.73 0.974 6.58 2.47 -- 4.68 -- -- -0.22 -- 76.56 534 4.42 18.2
488.91 1.03 6.71 -- 3.64 2.68 -- -- -0.48 17 6.445 345 6.58 19.7
1847.35 2.01 6.65 2.21 -- -- -- -- -0.509 -- -- -- -- --
646.38 1.19 6.79 -- 5.06 -- -- -- -0.651 17.7 -- -- -- --
595.99 1.14 6.66 -- -- 4.67 -- -- -0.538 -- 89.34 535 4.62 17.9
1976.5 2.08 6.71 -- -- -- -- -- -0.754 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.84 wind 7.0 270 < th dose independent rect. 7 20
2 357.73 wind 7.0 270 < th dose independent rect. 8 18
6 365.13 radiation 20.0 270 < th dose dependent rect. 3 5
7 366.18 radiation 20.0 270 < th dose independent rect. 2 6
8 366.44 radiation 30.0 270 < th dose dependent rect. 2 7
15 368.01 radiation 10.0 270 < th dose independent rect. 3 4
19 368.76 temperature 15.0 270 > th dose independent rect. 7 20
29 369.84 wind 9.0 270 < th dose dependent rect. 8 18
39 371.13 wind 5.0 270 < th dose independent rect. 3 4
43 371.76 wind 7.0 270 < th dose independent rect. 19 8
46 372.21 precipitation 0.1 270 < th dose independent rect. 3 4
47 372.21 precipitation 0.1 270 < th dose dependent rect. 3 4
50 372.54 temperature 10.0 270 > th dose independent rect. 3 4
52 372.54 temperature 30.0 270 < th dose independent rect. 3 4
53 372.54 humidity 50.0 270 > th dose independent rect. 3 4
55 372.54 atmosphere 995.0 270 > th dose independent rect. 3 4
56 372.54 atmosphere 1015.0 270 < th dose independent rect. 3 4
57 372.54 radiation 30.0 270 < th dose independent rect. 3 4
65 372.95 precipitation 0.1 270 < th dose independent rect. 1 7
66 372.95 precipitation 0.1 270 < th dose dependent rect. 1 7
69 373.14 wind 9.0 270 < th dose dependent rect. 7 20
72 373.19 wind 7.0 270 < th dose independent rect. 2 6
73 373.19 atmosphere 1010.0 270 < th dose independent rect. 15 16
75 373.25 humidity 70.0 90 > th dose independent rect. 3 8
77 373.32 humidity 70.0 270 > th dose independent rect. 2 6
78 373.37 temperature 10.0 270 > th dose independent rect. 1 7
80 373.37 temperature 30.0 270 < th dose independent rect. 1 7
81 373.37 humidity 50.0 270 > th dose independent rect. 1 7
83 373.37 atmosphere 995.0 270 > th dose independent rect. 1 7
84 373.37 atmosphere 1015.0 270 < th dose independent rect. 1 7
85 373.37 temperature 10.0 270 > th dose independent rect. 8 17
101 373.96 precipitation 0.1 270 < th dose independent rect. 8 17
102 373.96 precipitation 0.1 270 < th dose dependent rect. 8 17
105 374.15 temperature 15.0 270 > th dose independent rect. 15 16
107 374.46 radiation 40.0 90 < th dose independent rect. 4 18
111 374.73 precipitation 0.1 270 < th dose independent rect. 7 20
112 374.73 precipitation 0.1 270 < th dose dependent rect. 7 20
117 375.45 atmosphere 1010.0 270 < th dose independent rect. 12 10
183 378.28 temperature 10.0 270 > th dose independent rect. 19 8
184 378.28 temperature 30.0 270 < th dose independent rect. 19 8
185 378.28 humidity 50.0 270 > th dose independent rect. 19 8
186 378.28 atmosphere 995.0 270 > th dose independent rect. 19 8
187 378.28 radiation 1.0 270 < th dose independent rect. 19 8
192 378.28 temperature 10.0 270 > th dose independent rect. 3 16
193 378.28 atmosphere 1015.0 270 < th dose independent rect. 3 16
194 378.28 radiation 1.0 270 < th dose dependent rect. 19 8
201 378.42 precipitation 0.1 270 < th dose independent rect. 19 8
202 378.42 precipitation 0.1 270 < th dose dependent rect. 19 8
232 379.79 wind 9.0 270 < th dose dependent rect. 3 4
251 381.19 precipitation 0.1 270 < th dose independent rect. 3 16
252 381.19 precipitation 0.1 270 < th dose dependent rect. 3 16
281 382.96 wind 1.0 270 > th dose independent rect. 1 7
320 385.27 wind 9.0 270 < th dose independent rect. 3 16
342 385.40 wind 9.0 270 < th dose independent rect. 7 8
349 385.71 wind 9.0 270 < th dose dependent rect. 19 8
380 386.47 radiation 1.0 270 < th dose independent rect. 3 13
381 386.48 humidity 50.0 270 > th dose dependent rect. 3 4
384 386.57 atmosphere 995.0 270 > th dose independent rect. 3 16
402 386.78 temperature 15.0 270 > th dose independent rect. 12 9
410 386.92 wind 1.0 270 > th dose independent rect. 3 4
430 387.42 humidity 50.0 270 > th dose dependent rect. 2 6
434 387.52 radiation 40.0 270 < th dose dependent rect. 2 17
451 387.79 radiation 1.0 270 < th dose dependent rect. 3 14
452 387.80 precipitation 0.1 270 < th dose independent rect. 7 8
453 387.80 precipitation 0.1 270 < th dose dependent rect. 7 8
457 387.90 radiation 40.0 270 < th dose independent rect. 15 16
475 388.39 temperature 10.0 270 > th dose independent rect. 7 8
476 388.39 atmosphere 1015.0 270 < th dose independent rect. 7 8
494 388.72 temperature 10.0 270 > th dose dependent rect. 3 4
534 389.33 atmosphere 995.0 270 > th dose dependent rect. 20 6
535 389.34 radiation 20.0 10 < th dose independent rect. 4 19
571 389.79 wind 7.0 270 < th dose independent rect. 21 15
574 389.82 atmosphere 995.0 270 > th dose independent rect. 7 8
576 389.82 radiation 10.0 270 < th dose dependent rect. 3 16
593 389.96 humidity 50.0 270 > th dose dependent rect. 19 8
596 390.03 radiation 1.0 270 > th dose independent rect. 7 8
605 390.29 radiation 30.0 90 < th dose independent rect. 15 18
614 390.40 humidity 50.0 270 > th dose dependent rect. 20 6
616 390.41 temperature 30.0 270 < th dose dependent rect. 3 4
621 390.43 radiation 40.0 90 < th dose dependent rect. 4 18
632 390.75 atmosphere 995.0 270 > th dose independent rect. 8 18
672 391.30 temperature 30.0 270 < th dose dependent rect. 2 6
678 391.49 temperature 15.0 10 > th dose independent rect. 16 17
696 391.80 atmosphere 995.0 90 > th dose dependent rect. 22 6
698 391.82 wind 5.0 270 < th dose independent rect. 21 4
714 392.21 atmosphere 995.0 270 > th dose independent rect. 15 16
725 392.26 atmosphere 1015.0 10 < th dose independent rect. 16 17
736 392.36 radiation 40.0 270 < th dose dependent rect. 15 16
739 392.41 humidity 80.0 270 > th dose independent rect. 21 4
758 392.55 wind 9.0 270 < th dose independent rect. 15 16
759 392.57 temperature 10.0 90 > th dose dependent rect. 8 7
790 392.86 radiation 40.0 10 < th dose dependent rect. 5 17
813 392.95 precipitation 0.1 270 < th dose independent rect. 15 16
814 392.95 precipitation 0.1 270 < th dose dependent rect. 15 16
881 393.60 atmosphere 995.0 270 > th dose independent rect. 7 20
920 394.46 temperature 10.0 270 > th dose independent rect. 21 15
921 394.46 atmosphere 995.0 270 > th dose independent rect. 21 15
930 394.67 temperature 10.0 10 > th dose dependent rect. 4 5
949 394.92 wind 9.0 270 < th dose dependent rect. 21 4
997 395.87 temperature 30.0 90 < th dose dependent rect. 3 8
999 395.93 temperature 10.0 1440 > th dose independent rect. 5 5