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Os05g0574500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP-binding nuclear protein Ran1B (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.2 (0.0231) R2 : 0.527
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.775 (0.0608) R2dC : 0.197 R2C : -0.0318
β3 : -2 (0.0923) R2dE : 0.554 R2E : 0.318
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0486) R2dN8 : 0.0083 R2N8 : 0.0022
σ : 0.433
deviance : 86.55
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_____
C
peak time of C : 9.36
E
wheather : radiation
threshold : 1.391
memory length : 261
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20.9
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.13 0.415 15.2 -0.505 0.832 -1.94 -0.582 -0.0231 0.0734 9.14 0.9714 287 20.9 --
78.12 0.412 15.2 -0.507 0.83 -1.94 -0.586 -- 0.0737 9.18 0.98 288 20.8 --
79.16 0.414 15.2 -0.53 0.836 -1.94 -- -0.32 0.0752 9.13 0.9772 288 20.8 --
79.33 0.415 15.2 -0.526 0.832 -1.94 -- -- 0.0733 9.16 0.979 288 20.9 --
105.33 0.478 15.2 -0.518 -- -1.92 -- -0.426 0.0534 -- 1.338 212 19.5 --
124.87 0.524 15.2 -0.419 0.936 -- -0.00773 -- 0.0617 14.4 -- -- -- --
124.87 0.523 15.2 -0.419 0.936 -- -- -- 0.0617 14.4 -- -- -- --
104.8 0.477 15.2 -0.523 -- -1.74 -- -- 0.12 -- 0.92 243 19.5 --
86.55 0.433 15.2 -- 0.775 -2 -- -- 0.122 9.36 1.391 261 20.9 --
176.71 0.621 15.2 -0.458 -- -- -- -- 0.0387 -- -- -- -- --
129.49 0.532 15.2 -- 0.944 -- -- -- 0.108 14.4 -- -- -- --
112.51 0.494 15.2 -- -- -1.7 -- -- 0.106 -- 1.11 200 19.7 --
182.26 0.63 15.2 -- -- -- -- -- 0.0896 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.22 temperature 10.0 270 > th dose dependent rect. 18 8
5 74.45 radiation 1.0 270 < th dose independent rect. 3 15
6 74.45 radiation 1.0 270 < th dose dependent rect. 3 15
9 75.16 temperature 10.0 90 > th dose dependent rect. 7 20
14 76.04 temperature 10.0 10 > th dose dependent rect. 8 19
17 76.85 radiation 1.0 270 > th dose independent rect. 17 21
18 76.89 temperature 15.0 10 > th dose dependent rect. 20 8
28 78.65 radiation 1.0 270 < th dose independent sin 3 NA
30 78.73 radiation 1.0 270 > th dose independent sin 3 NA
49 79.99 temperature 10.0 270 > th dose dependent rect. 19 16
53 80.28 radiation 1.0 270 < th dose dependent sin 2 NA
61 80.79 wind 1.0 270 > th dose independent rect. 1 6
87 81.75 humidity 90.0 90 < th dose independent rect. 7 8
94 81.95 wind 1.0 270 > th dose independent rect. 3 2
100 82.26 radiation 1.0 270 > th dose independent rect. 6 8
101 82.35 wind 1.0 270 > th dose independent rect. 2 16
115 82.74 temperature 20.0 270 > th dose independent rect. 7 18
138 82.93 wind 1.0 270 > th dose independent rect. 2 4
162 83.64 precipitation 0.1 270 < th dose independent rect. 17 9
163 83.64 precipitation 0.1 270 < th dose dependent rect. 17 9
181 84.02 temperature 15.0 270 > th dose independent rect. 6 8
186 84.22 temperature 15.0 270 > th dose independent rect. 6 20
187 84.22 radiation 40.0 90 < th dose dependent rect. 15 17
200 84.47 radiation 40.0 10 < th dose dependent rect. 14 19
221 84.73 wind 7.0 270 < th dose independent rect. 17 9
224 84.84 radiation 10.0 270 < th dose independent rect. 1 6
226 84.96 precipitation 0.1 270 < th dose independent rect. 7 18
228 84.96 precipitation 0.1 270 < th dose dependent rect. 7 18
232 85.01 precipitation 0.1 270 < th dose independent rect. 5 22
233 85.01 precipitation 0.1 270 < th dose dependent rect. 5 22
236 85.10 temperature 20.0 270 > th dose independent rect. 18 8
240 85.15 radiation 10.0 270 < th dose independent rect. 17 9
248 85.23 radiation 1.0 270 < th dose independent rect. 3 3
254 85.42 precipitation 0.1 270 < th dose independent rect. 6 20
255 85.42 precipitation 0.1 270 < th dose dependent rect. 6 20
259 85.46 radiation 10.0 43200 < th dose dependent rect. 21 7
287 85.78 precipitation 0.1 270 < th dose independent rect. 6 8
288 85.78 precipitation 0.1 270 < th dose dependent rect. 6 8
295 85.85 radiation 1.0 270 < th dose dependent rect. 3 3
308 86.00 temperature 10.0 270 > th dose independent rect. 2 15
309 86.00 atmosphere 1015.0 270 < th dose independent rect. 2 15
318 86.14 wind 9.0 270 < th dose independent rect. 6 8
321 86.16 atmosphere 995.0 270 > th dose dependent rect. 2 4
322 86.17 radiation 30.0 90 < th dose independent rect. 15 16
328 86.23 atmosphere 995.0 270 > th dose independent rect. 2 15
338 86.38 wind 1.0 270 > th dose independent rect. 13 17
339 86.38 atmosphere 995.0 270 > th dose dependent rect. 1 6
342 86.41 radiation 40.0 270 < th dose dependent rect. 17 9
346 86.43 atmosphere 995.0 270 > th dose independent rect. 6 8
347 86.43 atmosphere 1015.0 270 < th dose independent rect. 6 8
348 86.43 temperature 10.0 270 > th dose independent rect. 14 16
356 86.54 wind 9.0 270 < th dose independent rect. 7 18
361 86.60 wind 7.0 270 < th dose independent rect. 1 6
370 86.67 humidity 70.0 270 > th dose independent rect. 1 6
375 86.68 atmosphere 995.0 270 > th dose dependent rect. 3 2
381 86.70 humidity 50.0 270 > th dose independent rect. 17 9
382 86.70 radiation 10.0 270 < th dose dependent rect. 18 8
404 86.85 temperature 10.0 270 > th dose independent rect. 1 6
406 86.85 temperature 30.0 270 < th dose independent rect. 1 6
407 86.85 humidity 50.0 270 > th dose independent rect. 1 6
409 86.85 atmosphere 995.0 270 > th dose independent rect. 1 6
410 86.85 atmosphere 1015.0 270 < th dose independent rect. 1 6
426 86.97 wind 9.0 270 < th dose independent rect. 14 16
429 86.99 wind 9.0 270 < th dose independent rect. 2 15
433 87.05 atmosphere 995.0 90 > th dose independent rect. 15 16
437 87.09 atmosphere 995.0 270 > th dose independent rect. 18 8
446 87.13 wind 9.0 270 < th dose independent rect. 6 20
452 87.20 temperature 20.0 10 > th dose independent rect. 20 8
463 87.28 precipitation 0.1 270 < th dose independent rect. 1 6
464 87.28 precipitation 0.1 270 < th dose dependent rect. 1 6
465 87.29 wind 7.0 270 < th dose independent rect. 2 4
472 87.35 wind 9.0 270 < th dose independent rect. 5 22
480 87.41 radiation 10.0 10 < th dose independent rect. 4 16
485 87.46 radiation 1.0 10 > th dose independent rect. 8 8
492 87.50 wind 7.0 270 < th dose independent rect. 3 2
494 87.50 temperature 10.0 270 > th dose independent rect. 2 4
496 87.50 temperature 30.0 270 < th dose independent rect. 2 4
497 87.50 humidity 50.0 270 > th dose independent rect. 2 4
500 87.50 atmosphere 995.0 270 > th dose independent rect. 2 4
501 87.50 atmosphere 1015.0 270 < th dose independent rect. 2 4
538 87.62 temperature 10.0 270 > th dose independent rect. 3 2
540 87.62 temperature 30.0 270 < th dose independent rect. 3 2
541 87.62 humidity 50.0 270 > th dose independent rect. 3 2
544 87.62 atmosphere 995.0 270 > th dose independent rect. 3 2
545 87.62 atmosphere 1010.0 270 < th dose independent rect. 3 2
564 87.76 temperature 25.0 270 < th dose independent rect. 13 17
577 87.90 radiation 20.0 10 < th dose dependent rect. 5 15
578 87.91 precipitation 0.1 270 < th dose independent rect. 2 4
579 87.91 precipitation 0.1 270 < th dose dependent rect. 2 4
583 87.95 precipitation 0.1 270 < th dose independent rect. 2 15
584 87.95 precipitation 0.1 270 < th dose dependent rect. 2 15
585 87.98 temperature 30.0 270 < th dose independent rect. 18 8
590 88.01 temperature 10.0 90 > th dose dependent rect. 7 8
616 88.24 humidity 50.0 270 > th dose independent rect. 6 7
620 88.35 temperature 30.0 90 < th dose dependent rect. 15 17
634 88.41 wind 9.0 270 < th dose dependent rect. 7 6
649 88.51 precipitation 0.1 270 < th dose independent rect. 3 2
650 88.51 precipitation 0.1 270 < th dose dependent rect. 3 2
665 88.63 wind 9.0 90 < th dose dependent rect. 8 19
669 88.66 temperature 20.0 90 > th dose independent rect. 20 18
678 88.72 radiation 20.0 90 < th dose independent rect. 13 19
821 89.49 temperature 20.0 10 > th dose independent rect. 8 19
842 89.55 humidity 50.0 90 > th dose independent rect. 15 16
864 89.59 humidity 50.0 270 > th dose dependent rect. 1 6
885 89.68 temperature 30.0 270 < th dose dependent rect. 3 2
895 89.75 atmosphere 1015.0 270 < th dose independent rect. 7 18
905 89.80 humidity 50.0 270 > th dose dependent rect. 3 2
912 89.84 temperature 25.0 270 > th dose independent rect. 17 20
937 89.94 humidity 50.0 270 > th dose dependent rect. 2 4
941 89.96 atmosphere 995.0 10 > th dose dependent rect. 3 5
995 90.17 wind 1.0 270 > th dose independent rect. 18 8