Os05g0573000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0573000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.21 | 0.416 | 7.12 | 0.132 | 0.717 | 1.2 | 0.0263 | -0.683 | -0.479 | 11.6 | 17.46 | 29 | -- | -- |
| 78.52 | 0.413 | 7.11 | 0.239 | 0.719 | 1.26 | -0.143 | -- | -0.449 | 11.6 | 16.08 | 28 | -- | -- |
| 78.21 | 0.412 | 7.12 | 0.136 | 0.716 | 1.2 | -- | -0.661 | -0.479 | 11.6 | 17.5 | 28 | -- | -- |
| 78.59 | 0.413 | 7.11 | 0.235 | 0.717 | 1.27 | -- | -- | -0.451 | 11.6 | 15.94 | 23 | -- | -- |
| 102.08 | 0.473 | 7.16 | -0.00919 | -- | 1.79 | -- | -0.742 | -0.58 | -- | 17.5 | 28 | -- | -- |
| 95.74 | 0.459 | 7.07 | 0.493 | 1.03 | -- | 0.0622 | -- | -0.259 | 12.6 | -- | -- | -- | -- |
| 95.76 | 0.458 | 7.07 | 0.496 | 1.03 | -- | -- | -- | -0.259 | 12.6 | -- | -- | -- | -- |
| 102.35 | 0.473 | 7.15 | 0.106 | -- | 1.78 | -- | -- | -0.549 | -- | 17.5 | 10 | -- | -- |
| 79.9 | 0.416 | 7.12 | -- | 0.694 | 1.41 | -- | -- | -0.488 | 11.5 | 15.3 | 23 | -- | -- |
| 162.79 | 0.596 | 7.09 | 0.459 | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
| 102.23 | 0.473 | 7.08 | -- | 1.03 | -- | -- | -- | -0.314 | 12.6 | -- | -- | -- | -- |
| 102.63 | 0.473 | 7.15 | -- | -- | 1.81 | -- | -- | -0.564 | -- | 17.5 | 10 | -- | -- |
| 168.35 | 0.606 | 7.1 | -- | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.97 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 6 | 77.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 8 | 77.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 11 | 77.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 13 | 78.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 18 | 78.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 24 | 78.26 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 29 | 78.38 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 43 | 78.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 71 | 78.77 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 88 | 78.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 97 | 79.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 114 | 79.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 125 | 79.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 132 | 79.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 137 | 79.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 157 | 79.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 175 | 79.53 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 177 | 79.54 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 181 | 79.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 191 | 79.60 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 203 | 79.65 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 216 | 79.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 250 | 79.87 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 252 | 79.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 269 | 79.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 283 | 79.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 289 | 79.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 298 | 79.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 299 | 79.97 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 303 | 79.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 309 | 79.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 316 | 80.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 331 | 80.04 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 336 | 80.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 360 | 80.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 367 | 80.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 403 | 80.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 428 | 80.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 447 | 80.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 505 | 80.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 514 | 80.33 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 547 | 80.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 557 | 80.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 613 | 80.43 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 638 | 80.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 644 | 80.47 | humidity | 80 | 14400 | > th | dose dependent | sin | 12 | NA |
| 680 | 80.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 733 | 80.55 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 760 | 80.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 762 | 80.58 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 962 | 80.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 989 | 80.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |