Os05g0572900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0572900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140 | 0.556 | 5.17 | 1.86 | 3.45 | 1.46 | 1.94 | 1.98 | 0.213 | 18.5 | 21.39 | 57 | -- | -- |
| 143.49 | 0.562 | 5.15 | 1.95 | 3.43 | 0.932 | 1.85 | -- | 0.229 | 18.5 | 21.69 | 82 | -- | -- |
| 149.35 | 0.569 | 5.17 | 1.84 | 3.48 | 1.37 | -- | 1.68 | 0.219 | 18.5 | 21.56 | 59 | -- | -- |
| 151.68 | 0.574 | 5.15 | 1.93 | 3.46 | 0.908 | -- | -- | 0.229 | 18.5 | 22 | 61 | -- | -- |
| 767.76 | 1.3 | 5.09 | 1.76 | -- | 0.805 | -- | 0.538 | 0.134 | -- | 21.56 | 59 | -- | -- |
| 151.9 | 0.578 | 5.17 | 1.79 | 3.42 | -- | 1.82 | -- | 0.139 | 18.7 | -- | -- | -- | -- |
| 160.19 | 0.593 | 5.17 | 1.76 | 3.43 | -- | -- | -- | 0.145 | 18.6 | -- | -- | -- | -- |
| 766.84 | 1.3 | 5.08 | 1.81 | -- | 0.672 | -- | -- | 0.161 | -- | 23 | 30 | -- | -- |
| 236.41 | 0.716 | 5.26 | -- | 3.32 | -0.585 | -- | -- | -0.162 | 18.7 | 34.2 | 2 | -- | -- |
| 773.02 | 1.3 | 5.1 | 1.68 | -- | -- | -- | -- | 0.0752 | -- | -- | -- | -- | -- |
| 242 | 0.728 | 5.21 | -- | 3.41 | -- | -- | -- | -0.0516 | 18.6 | -- | -- | -- | -- |
| 632.89 | 1.17 | 5.24 | -- | -- | -3.63 | -- | -- | -0.535 | -- | 71.32 | 422 | -- | -- |
| 847.47 | 1.36 | 5.14 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.02 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 3 | 128.83 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 6 | 129.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 11 | 130.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 15 | 130.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 18 | 130.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 28 | 131.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 32 | 131.83 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 37 | 132.15 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 40 | 132.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 72 | 133.12 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 18 | 8 |
| 94 | 133.63 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 19 |
| 110 | 133.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 115 | 134.08 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 6 |
| 118 | 134.14 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 158 | 134.65 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 169 | 134.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 175 | 134.79 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 188 | 134.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 204 | 135.04 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 217 | 135.16 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 227 | 135.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 253 | 135.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 261 | 135.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 272 | 135.68 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 305 | 135.96 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 312 | 135.98 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 323 | 136.04 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 356 | 136.21 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 23 | 8 |
| 377 | 136.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 382 | 136.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 385 | 136.44 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 436 | 136.72 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 445 | 136.77 | temperature | 20.0 | 30 | > th | dose independent | rect. | 7 | 19 |
| 454 | 136.80 | humidity | 70.0 | 270 | > th | dose independent | rect. | 6 | 14 |
| 458 | 136.81 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 467 | 136.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 14 |
| 491 | 136.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 522 | 137.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 541 | 137.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 566 | 137.23 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 580 | 137.29 | wind | 5.0 | 720 | < th | dose independent | rect. | 3 | 12 |
| 587 | 137.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 20 |
| 588 | 137.31 | humidity | 70.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 596 | 137.33 | radiation | 20.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 608 | 137.38 | humidity | 60.0 | 10 | > th | dose independent | rect. | 7 | 16 |
| 618 | 137.42 | humidity | 60.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 622 | 137.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 645 | 137.52 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 662 | 137.58 | humidity | 60.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 680 | 137.61 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 695 | 137.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 719 | 137.71 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 720 | 137.72 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 725 | 137.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 6 |
| 728 | 137.73 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 729 | 137.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 767 | 137.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 782 | 137.83 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 800 | 137.86 | humidity | 60.0 | 10 | > th | dose independent | rect. | 9 | 14 |
| 809 | 137.87 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 844 | 137.95 | humidity | 60.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 855 | 137.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 858 | 137.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 939 | 138.11 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 959 | 138.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 974 | 138.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 16 |