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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0572700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein phosphatase 2C.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.0353) R2 : 0.652
β1 : 2.77 (0.132) R2dD : 0.366 R2D : 0.102
β2 : 0.915 (0.0867) R2dC : 0.0901 R2C : 0.0599
β3 : -1.25 (0.0932) R2dE : 0.154 R2E : 0.0911
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.08 (0.0763) R2dN8 : 0.211 R2N8 : 0.135
σ : 0.657
deviance : 198.88
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_____
C
peak time of C : 14.4
E
wheather : temperature
threshold : 29.1
memory length : 1372
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.72 0.661 5.26 3.39 0.944 -1.6 -0.329 3.09 1.12 14.5 29.1 1393 -- --
200.74 0.66 5.27 2.9 0.965 -1.26 -0.491 -- 1.25 14.3 27.53 1422 -- --
198.1 0.656 5.26 3.39 0.946 -1.59 -- 3.15 1.12 14.5 29.1 1400 -- --
198.88 0.657 5.34 2.77 0.915 -1.25 -- -- 1.08 14.4 29.1 1372 -- --
246.67 0.731 5.27 3.4 -- -1.8 -- 3.3 1.1 -- 28.94 1260 -- --
276.91 0.78 5.29 2.4 1.09 -- -0.0716 -- 1.27 14.4 -- -- -- --
276.93 0.779 5.29 2.4 1.09 -- -- -- 1.27 14.4 -- -- -- --
246.64 0.731 5.33 2.77 -- -1.44 -- -- 1.09 -- 28.61 1245 -- --
389.6 0.919 5.39 -- 0.922 -0.876 -- -- 0.808 14.3 30.4 1294 -- --
347.23 0.871 5.3 2.35 -- -- -- -- 1.24 -- -- -- -- --
428.38 0.968 5.35 -- 1.04 -- -- -- 1 14.3 -- -- -- --
437.18 0.974 5.41 -- -- -1.05 -- -- 0.753 -- 30.3 1197 -- --
493.04 1.04 5.36 -- -- -- -- -- 0.982 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.12 temperature 30 1440 < th dose independent rect. 17 18
4 196.27 temperature 30 1440 > th dose independent rect. 17 19
6 196.45 temperature 30 1440 > th dose independent sin 11 NA
7 196.47 temperature 30 1440 < th dose independent sin 11 NA
14 196.88 temperature 30 1440 > th dose dependent rect. 17 18
26 197.26 temperature 30 1440 > th dose dependent sin 10 NA
40 197.82 temperature 30 1440 > th dose independent rect. 16 3
63 198.13 temperature 30 1440 < th dose independent rect. 16 5
67 198.19 temperature 30 1440 < th dose independent rect. 16 12
68 198.22 temperature 30 1440 < th dose independent rect. 16 8
110 198.83 temperature 30 1440 > th dose dependent no NA NA
111 198.83 temperature 30 1440 > th dose dependent rect. 8 11
258 199.08 temperature 30 1440 > th dose dependent sin 21 NA
272 199.16 temperature 30 1440 < th dose independent rect. 7 21
274 199.17 temperature 30 1440 < th dose independent rect. 7 19
279 199.18 temperature 30 1440 < th dose independent rect. 7 14
300 199.19 temperature 30 1440 < th dose independent rect. 7 17
321 199.23 temperature 30 1440 < th dose independent rect. 1 20
322 199.23 temperature 30 1440 < th dose independent rect. 23 22
351 199.25 temperature 30 1440 < th dose independent rect. 1 23
354 199.26 temperature 30 1440 < th dose independent no NA NA
359 199.26 temperature 30 1440 < th dose independent rect. 3 23
366 199.27 temperature 30 1440 < th dose independent rect. 20 23
433 199.41 temperature 30 1440 > th dose dependent rect. 18 15
436 199.48 temperature 25 1440 > th dose dependent rect. 18 4
462 199.71 temperature 30 1440 > th dose independent rect. 9 10
491 199.75 temperature 30 1440 > th dose independent no NA NA
587 199.84 temperature 30 4320 > th dose dependent rect. 17 2
671 200.14 temperature 25 1440 > th dose dependent rect. 7 1
714 200.33 temperature 30 1440 < th dose independent rect. 9 4
722 200.38 temperature 30 1440 > th dose independent rect. 9 3
723 200.41 temperature 30 1440 < th dose independent rect. 7 6
735 200.53 temperature 30 1440 < th dose independent rect. 23 14
737 200.54 temperature 30 1440 < th dose independent rect. 1 12