Os05g0571800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0571800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.78 | 0.328 | 12 | 0.589 | 2.16 | 0.769 | -0.549 | -0.983 | 0.193 | 15.6 | 22.64 | 663 | -- | -- |
| 49.77 | 0.329 | 12 | 0.52 | 2.2 | 0.973 | -0.64 | -- | 0.163 | 15.6 | 22.1 | 589 | -- | -- |
| 49.66 | 0.328 | 12 | 0.578 | 2.15 | 0.776 | -- | -1.02 | 0.186 | 15.7 | 22.4 | 673 | -- | -- |
| 50.65 | 0.331 | 12 | 0.479 | 2.17 | 1.03 | -- | -- | 0.166 | 15.7 | 21.96 | 613 | -- | -- |
| 280.24 | 0.784 | 12.1 | -0.122 | -- | -1.47 | -- | -0.411 | -0.312 | -- | 27.7 | 1084 | -- | -- |
| 60.33 | 0.364 | 12 | 0.243 | 2.17 | -- | -0.661 | -- | 0.038 | 15.5 | -- | -- | -- | -- |
| 61.67 | 0.368 | 12 | 0.231 | 2.16 | -- | -- | -- | 0.0343 | 15.5 | -- | -- | -- | -- |
| 265.6 | 0.762 | 12.1 | -0.224 | -- | -2 | -- | -- | -0.29 | -- | 43.98 | 1143 | -- | -- |
| 55.91 | 0.348 | 12 | -- | 2.16 | 0.757 | -- | -- | 0.0907 | 15.6 | 22.3 | 602 | -- | -- |
| 323.34 | 0.84 | 12 | 0.14 | -- | -- | -- | -- | -0.0232 | -- | -- | -- | -- | -- |
| 63.07 | 0.372 | 12 | -- | 2.16 | -- | -- | -- | 0.00852 | 15.5 | -- | -- | -- | -- |
| 264.41 | 0.757 | 12.1 | -- | -- | -1.96 | -- | -- | -0.259 | -- | 42.16 | 86 | -- | -- |
| 323.86 | 0.84 | 12 | -- | -- | -- | -- | -- | -0.0387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 4 | 42.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 7 | 43.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 12 | 43.14 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 50 | 44.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 52 | 44.07 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 70 | 44.31 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 77 | 44.40 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 78 | 44.44 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 144 | 45.28 | temperature | 20.0 | 720 | < th | dose independent | sin | 9 | NA |
| 156 | 45.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 191 | 45.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 227 | 45.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 3 |
| 231 | 45.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 249 | 46.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 252 | 46.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 278 | 46.29 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 292 | 46.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 305 | 46.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 306 | 46.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 337 | 46.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 354 | 46.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 359 | 46.74 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 395 | 46.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 396 | 46.92 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 397 | 46.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 398 | 46.92 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 399 | 46.92 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 407 | 46.96 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 431 | 47.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 444 | 47.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 449 | 47.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 451 | 47.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 466 | 47.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 6 |
| 490 | 47.28 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 12 |
| 498 | 47.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 523 | 47.41 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 538 | 47.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 550 | 47.51 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 574 | 47.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 583 | 47.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 15 |
| 587 | 47.67 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 611 | 47.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 630 | 47.80 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 652 | 47.87 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 691 | 47.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 20 |
| 697 | 48.01 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 706 | 48.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 717 | 48.07 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 728 | 48.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 734 | 48.13 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 759 | 48.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 19 |
| 760 | 48.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 771 | 48.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 807 | 48.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 10 |
| 810 | 48.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 826 | 48.32 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 836 | 48.36 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 846 | 48.38 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 849 | 48.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 20 |
| 850 | 48.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 853 | 48.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 20 |
| 857 | 48.42 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 871 | 48.46 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 18 |
| 883 | 48.48 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 17 |
| 888 | 48.48 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 900 | 48.52 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 901 | 48.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 18 |
| 909 | 48.54 | humidity | 50.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 919 | 48.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 920 | 48.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 956 | 48.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 970 | 48.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 978 | 48.68 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 10 |