Os05g0571600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0571600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.54 | 0.597 | 9.08 | -0.707 | 2.74 | -1.21 | -0.692 | -1.48 | -0.0926 | 23.7 | 4.988 | 4331 | 13 | 0.69 |
| 164.36 | 0.597 | 9.11 | -0.598 | 2.73 | -1.19 | -0.678 | -- | -0.0863 | 23.6 | 5.355 | 4422 | 13 | 0.683 |
| 163.6 | 0.596 | 9.08 | -0.685 | 2.74 | -1.22 | -- | -1.47 | -0.0898 | 23.7 | 4.958 | 4327 | 13 | 0.698 |
| 166.08 | 0.6 | 9.11 | -0.574 | 2.72 | -1.2 | -- | -- | -0.0924 | 23.6 | 5.324 | 4423 | 13 | 0.7 |
| 632.99 | 1.17 | 9.08 | -0.602 | -- | -1.25 | -- | -0.549 | -0.0877 | -- | 4.989 | 4353 | 13 | 0.683 |
| 201.56 | 0.666 | 9.15 | -0.269 | 2.91 | -- | -0.775 | -- | -0.198 | 23.6 | -- | -- | -- | -- |
| 204.15 | 0.669 | 9.14 | -0.238 | 2.92 | -- | -- | -- | -0.195 | 23.6 | -- | -- | -- | -- |
| 620.12 | 1.16 | 9.12 | -0.339 | -- | -1.52 | -- | -- | -0.133 | -- | 5.184 | 4448 | 12.9 | 0.717 |
| 174.52 | 0.615 | 9.11 | -- | 2.76 | -0.981 | -- | -- | -0.0723 | 23.6 | 5.601 | 4423 | 13 | 0.683 |
| 738.46 | 1.27 | 9.08 | -0.157 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 205.63 | 0.671 | 9.14 | -- | 2.91 | -- | -- | -- | -0.169 | 23.6 | -- | -- | -- | -- |
| 606.97 | 1.15 | 9.1 | -- | -- | -1.71 | -- | -- | 0.17 | -- | 5.597 | 4543 | 13 | 0.633 |
| 739.11 | 1.27 | 9.07 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.59 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 168.43 | wind | 7.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 3 | 168.45 | wind | 7.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 4 | 168.85 | wind | 3.0 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 7 | 170.06 | wind | 7.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 11 | 170.58 | wind | 7.0 | 4320 | < th | dose independent | rect. | 12 | 4 |
| 13 | 170.88 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 15 | 170.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 19 | 171.20 | wind | 3.0 | 90 | < th | dose dependent | rect. | 2 | 16 |
| 22 | 171.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 54 | 172.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 20 |
| 66 | 172.90 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 74 | 173.06 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 79 | 173.19 | wind | 7.0 | 4320 | > th | dose independent | rect. | 6 | 10 |
| 95 | 173.43 | wind | 7.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 155 | 174.20 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 184 | 174.53 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 209 | 174.75 | wind | 3.0 | 720 | < th | dose independent | rect. | 2 | 2 |
| 212 | 174.77 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 20 |
| 215 | 174.80 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 223 | 174.85 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 8 |
| 258 | 175.06 | wind | 9.0 | 90 | < th | dose dependent | rect. | 2 | 17 |
| 264 | 175.13 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 290 | 175.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 305 | 175.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 324 | 175.49 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 335 | 175.53 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 344 | 175.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 360 | 175.65 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 404 | 175.83 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 20 |
| 409 | 175.84 | wind | 3.0 | 30 | < th | dose dependent | rect. | 24 | 10 |
| 433 | 175.93 | wind | 7.0 | 4320 | < th | dose independent | sin | 0 | NA |
| 438 | 175.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 451 | 175.98 | wind | 7.0 | 4320 | > th | dose independent | sin | 0 | NA |
| 508 | 176.22 | wind | 7.0 | 4320 | > th | dose dependent | sin | 0 | NA |
| 511 | 176.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 580 | 176.58 | wind | 3.0 | 30 | < th | dose dependent | sin | 4 | NA |
| 611 | 176.72 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 629 | 176.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 637 | 176.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 5 |
| 638 | 176.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 673 | 176.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 684 | 177.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 687 | 177.01 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 699 | 177.05 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 700 | 177.05 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 708 | 177.06 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 739 | 177.19 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 740 | 177.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 7 |
| 741 | 177.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 745 | 177.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 846 | 177.58 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 900 | 177.78 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 912 | 177.83 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 918 | 177.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 5 |
| 920 | 177.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 921 | 177.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 5 |
| 924 | 177.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 5 |
| 925 | 177.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 926 | 177.85 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 931 | 177.85 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 935 | 177.86 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 938 | 177.86 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 987 | 178.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 19 |