Os05g0571300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0571300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.59 | 0.539 | 5.37 | -0.827 | 1.37 | -1.2 | -3.45 | -2.55 | -0.424 | 9.62 | 21.5 | 23 | -- | -- |
| 141.22 | 0.553 | 5.38 | -0.807 | 1.07 | -1.42 | -1.24 | -- | -0.459 | 8.98 | 12.73 | 23 | -- | -- |
| 145.47 | 0.566 | 5.36 | -0.863 | 1.34 | -1.1 | -- | 0.0486 | -0.374 | 10.2 | 13.14 | 23 | -- | -- |
| 144.94 | 0.564 | 5.36 | -0.857 | 1.31 | -1.12 | -- | -- | -0.374 | 10.2 | 12.15 | 29 | -- | -- |
| 172.73 | 0.615 | 5.4 | -0.809 | -- | -1.98 | -- | 0.194 | -0.38 | -- | 10.22 | 13 | -- | -- |
| 165.75 | 0.604 | 5.33 | -0.831 | 2.49 | -- | -0.42 | -- | -0.359 | 10.9 | -- | -- | -- | -- |
| 166.48 | 0.604 | 5.33 | -0.847 | 2.49 | -- | -- | -- | -0.36 | 11 | -- | -- | -- | -- |
| 172.9 | 0.615 | 5.4 | -0.812 | -- | -1.98 | -- | -- | -0.381 | -- | 10.08 | 11 | -- | -- |
| 163.38 | 0.599 | 5.34 | -- | 1.28 | -1.12 | -- | -- | -0.285 | 10.3 | 10.02 | 29 | -- | -- |
| 551.97 | 1.1 | 5.4 | -0.902 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 185.39 | 0.637 | 5.31 | -- | 2.5 | -- | -- | -- | -0.266 | 11 | -- | -- | -- | -- |
| 190.19 | 0.644 | 5.38 | -- | -- | -1.99 | -- | -- | -0.292 | -- | 10.02 | 29 | -- | -- |
| 573.42 | 1.12 | 5.37 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.69 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 129.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 4 | 130.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 15 | 130.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 19 | 130.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 28 | 131.54 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 38 | 132.01 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 132.04 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 43 | 132.09 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 55 | 132.41 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 74 | 132.78 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 89 | 133.03 | humidity | 60 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 94 | 133.12 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 15 |
| 110 | 133.31 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 114 | 133.37 | humidity | 60 | 10 | > th | dose dependent | sin | 3 | NA |
| 123 | 133.50 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 15 |
| 125 | 133.50 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 128 | 133.54 | radiation | 30 | 270 | < th | dose independent | rect. | 24 | 11 |
| 130 | 133.58 | radiation | 1 | 30 | > th | dose independent | sin | 0 | NA |
| 149 | 133.82 | radiation | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 157 | 133.97 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 191 | 134.30 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 11 |
| 204 | 134.38 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 216 | 134.46 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 16 |
| 225 | 134.50 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 244 | 134.66 | radiation | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 308 | 135.08 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 339 | 135.34 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 9 |
| 399 | 135.66 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 9 |
| 415 | 135.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 475 | 136.03 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 8 |
| 482 | 136.05 | radiation | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 136.41 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 581 | 136.53 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 14 |
| 583 | 136.53 | radiation | 10 | 270 | < th | dose independent | rect. | 22 | 21 |
| 647 | 136.81 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 651 | 136.83 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 659 | 136.88 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 665 | 136.90 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 673 | 136.95 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 12 |
| 697 | 137.03 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 699 | 137.04 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 714 | 137.10 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 12 |
| 731 | 137.13 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 789 | 137.18 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 871 | 137.29 | radiation | 10 | 270 | < th | dose independent | sin | 5 | NA |
| 892 | 137.35 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 932 | 137.46 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 7 |
| 962 | 137.54 | temperature | 30 | 30 | < th | dose independent | sin | 23 | NA |
| 968 | 137.55 | radiation | 30 | 270 | < th | dose independent | rect. | 13 | 16 |
| 999 | 137.69 | humidity | 90 | 10 | < th | dose independent | sin | 0 | NA |