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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0570000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0175) R2 : 0.00113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0265 (0.0368) R2dN8 : 0.00146 R2N8 : 0.00113
σ : 0.33
deviance : 49.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.68 0.328 2.98 0.0727 0.0162 0.497 -0.29 -2.5 0.0386 23.4 0.1331 767 -- --
48.88 0.326 2.97 0.124 0.0111 -0.183 -0.291 -- 0.0314 23.5 -1.017 1086 -- --
49 0.326 2.98 0.0937 0.0309 0.385 -- -2.17 0.0376 3.49 0.1294 791 -- --
49.17 0.327 2.96 0.133 0.0317 -0.187 -- -- 0.0332 3.65 0.5729 884 -- --
49.05 0.326 2.98 0.0964 -- 0.344 -- -2.02 0.0374 -- 0.1317 884 -- --
49.12 0.329 2.96 0.0971 0.00955 -- -0.302 -- 0.0372 23.7 -- -- -- --
49.49 0.329 2.96 0.109 0.0251 -- -- -- 0.038 4.03 -- -- -- --
49.22 0.327 2.96 0.135 -- -0.202 -- -- 0.0344 -- 0.3638 882 -- --
49.61 0.328 2.97 -- 0.0328 -0.145 -- -- 0.0205 3.45 0.5 884 -- --
49.52 0.329 2.96 0.11 -- -- -- -- 0.0386 -- -- -- -- --
49.8 0.33 2.97 -- 0.0272 -- -- -- 0.0259 3.97 -- -- -- --
49.67 0.328 2.97 -- -- -0.137 -- -- 0.0222 -- 0.5 884 -- --
49.84 0.33 2.97 -- -- -- -- -- 0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.84 temperature 25.0 30 > th dose independent rect. 20 3
6 45.20 temperature 25.0 90 > th dose dependent rect. 20 3
7 45.21 atmosphere 1005.0 30 > th dose dependent rect. 20 3
11 45.47 wind 9.0 1440 < th dose independent rect. 23 1
13 45.47 temperature 10.0 1440 > th dose independent rect. 23 1
16 45.47 temperature 30.0 1440 < th dose independent rect. 23 1
20 45.47 humidity 50.0 1440 > th dose independent rect. 23 1
30 45.47 humidity 90.0 30 < th dose independent rect. 22 1
31 45.47 atmosphere 995.0 1440 > th dose independent rect. 23 1
32 45.47 radiation 1.0 1440 < th dose independent rect. 23 1
52 45.47 temperature 10.0 1440 > th dose independent rect. 24 23
55 45.47 temperature 25.0 30 > th dose dependent rect. 22 1
56 45.47 radiation 1.0 1440 < th dose dependent rect. 23 1
61 45.48 temperature 25.0 30 > th dose independent rect. 22 1
62 45.48 atmosphere 1005.0 30 > th dose independent rect. 22 1
63 45.48 humidity 90.0 30 < th dose dependent rect. 22 1
64 45.48 atmosphere 1005.0 30 > th dose dependent rect. 22 1
68 45.50 temperature 10.0 30 > th dose dependent rect. 22 1
72 45.51 wind 1.0 30 > th dose independent rect. 22 1
73 45.51 wind 5.0 30 < th dose independent rect. 22 1
76 45.51 temperature 10.0 30 > th dose independent rect. 22 1
78 45.51 temperature 30.0 30 < th dose independent rect. 22 1
79 45.51 humidity 50.0 30 > th dose independent rect. 22 1
82 45.51 atmosphere 995.0 30 > th dose independent rect. 22 1
84 45.51 atmosphere 1010.0 30 < th dose independent rect. 22 1
86 45.51 radiation 1.0 30 < th dose independent rect. 22 1
91 45.51 precipitation 0.1 30 < th dose independent rect. 22 1
92 45.51 temperature 10.0 30 > th dose independent rect. 23 23
93 45.51 radiation 1.0 30 < th dose dependent rect. 22 1
98 45.51 precipitation 0.1 30 < th dose dependent rect. 22 1
100 45.52 wind 7.0 30 < th dose dependent rect. 22 1
103 45.53 wind 1.0 30 > th dose dependent rect. 22 1
105 45.53 humidity 50.0 30 > th dose dependent rect. 22 1
114 45.59 wind 9.0 30 < th dose independent rect. 23 23
115 45.59 atmosphere 1015.0 30 < th dose dependent rect. 22 1
116 45.60 temperature 30.0 30 < th dose dependent rect. 22 1
130 45.69 radiation 40.0 43200 < th dose dependent rect. 23 1
182 45.88 temperature 25.0 270 > th dose independent rect. 20 1
183 45.88 temperature 25.0 90 > th dose dependent rect. 20 7
230 46.23 atmosphere 1005.0 30 > th dose independent rect. 20 3
236 46.29 atmosphere 995.0 30 > th dose independent rect. 23 23
243 46.36 humidity 90.0 30 < th dose independent rect. 20 3
247 46.38 humidity 80.0 30 > th dose independent rect. 20 3
275 46.52 precipitation 0.1 30 < th dose independent rect. 23 23
277 46.52 precipitation 0.1 30 < th dose dependent rect. 23 23
297 46.66 wind 5.0 30 < th dose independent rect. 20 3
307 46.72 precipitation 0.1 1440 < th dose independent rect. 23 1
310 46.72 precipitation 0.1 1440 < th dose dependent rect. 23 1
339 46.85 wind 7.0 30 < th dose dependent rect. 20 3
361 46.95 wind 1.0 30 > th dose independent rect. 20 3
373 46.98 atmosphere 995.0 30 > th dose independent rect. 23 21
374 46.98 atmosphere 1000.0 270 > th dose dependent rect. 19 1
381 47.01 wind 3.0 270 > th dose independent rect. 19 2
382 47.01 radiation 1.0 1440 < th dose dependent rect. 21 3
385 47.02 temperature 10.0 1440 > th dose independent rect. 21 3
388 47.02 temperature 30.0 1440 < th dose independent rect. 21 3
392 47.02 humidity 50.0 1440 > th dose independent rect. 21 3
398 47.02 atmosphere 995.0 1440 > th dose independent rect. 21 3
399 47.02 radiation 1.0 1440 < th dose independent rect. 21 3
421 47.02 temperature 10.0 1440 > th dose independent rect. 24 21
432 47.03 wind 9.0 30 < th dose independent rect. 23 21
436 47.03 radiation 20.0 43200 < th dose dependent rect. 21 3
443 47.05 temperature 15.0 30 > th dose independent rect. 23 21
446 47.05 temperature 10.0 30 > th dose dependent rect. 23 21
454 47.07 precipitation 0.1 30 < th dose independent rect. 20 3
460 47.07 precipitation 0.1 30 < th dose dependent rect. 20 3
465 47.08 radiation 1.0 30 < th dose dependent rect. 20 3
471 47.09 temperature 10.0 30 > th dose independent rect. 20 3
473 47.09 temperature 30.0 30 < th dose independent rect. 20 3
474 47.09 humidity 50.0 30 > th dose independent rect. 20 3
478 47.09 atmosphere 1010.0 30 < th dose independent rect. 20 3
480 47.09 radiation 1.0 30 < th dose independent rect. 20 3
485 47.09 precipitation 0.1 1440 < th dose independent rect. 21 3
494 47.09 precipitation 0.1 1440 < th dose dependent rect. 21 3
552 47.18 precipitation 0.1 30 < th dose independent rect. 23 21
555 47.18 precipitation 0.1 30 < th dose dependent rect. 23 21
596 47.22 humidity 50.0 30 > th dose dependent rect. 20 3
600 47.23 humidity 50.0 30 > th dose independent rect. 23 23
643 47.27 radiation 10.0 10 < th dose dependent rect. 23 21
670 47.30 radiation 1.0 30 < th dose independent rect. 23 21
689 47.33 wind 1.0 90 > th dose independent rect. 23 20
701 47.34 humidity 50.0 30 > th dose independent rect. 23 21
710 47.36 atmosphere 1015.0 30 < th dose independent rect. 23 23
723 47.38 radiation 10.0 10 < th dose dependent rect. 23 23
730 47.40 wind 9.0 270 < th dose independent rect. 21 22
761 47.42 temperature 10.0 270 > th dose independent rect. 21 22
777 47.44 atmosphere 995.0 270 > th dose independent rect. 21 22
787 47.46 atmosphere 1015.0 30 < th dose independent rect. 23 21
796 47.47 temperature 25.0 720 > th dose dependent rect. 23 10
802 47.48 radiation 10.0 4320 < th dose dependent rect. 21 1
803 47.48 radiation 10.0 43200 < th dose dependent rect. 21 1
818 47.50 wind 9.0 30 < th dose independent rect. 21 23
819 47.50 atmosphere 1000.0 30 > th dose independent rect. 21 23
831 47.51 temperature 10.0 1440 > th dose independent rect. 21 1
834 47.51 temperature 30.0 1440 < th dose independent rect. 21 1
838 47.51 humidity 50.0 1440 > th dose independent rect. 21 1
846 47.51 atmosphere 995.0 1440 > th dose independent rect. 21 1
847 47.51 radiation 1.0 1440 < th dose independent rect. 21 1
870 47.51 temperature 10.0 1440 > th dose independent rect. 22 23
879 47.52 wind 3.0 30 > th dose independent rect. 20 1
885 47.52 humidity 90.0 30 < th dose dependent rect. 20 1
894 47.53 wind 5.0 30 < th dose independent rect. 20 1
898 47.53 temperature 10.0 30 > th dose independent rect. 20 1
902 47.53 temperature 30.0 30 < th dose independent rect. 20 1
903 47.53 humidity 50.0 30 > th dose independent rect. 20 1
907 47.53 atmosphere 995.0 30 > th dose independent rect. 20 1
910 47.53 atmosphere 1010.0 30 < th dose independent rect. 20 1
912 47.53 radiation 1.0 30 < th dose independent rect. 20 1
917 47.53 precipitation 0.1 30 < th dose independent rect. 20 1
922 47.53 precipitation 0.1 270 < th dose independent rect. 21 22
923 47.53 temperature 10.0 30 > th dose independent rect. 21 23
924 47.53 radiation 1.0 30 < th dose independent rect. 23 23
925 47.53 wind 1.0 30 > th dose dependent rect. 20 1
930 47.53 radiation 1.0 30 < th dose dependent rect. 20 1
936 47.53 precipitation 0.1 30 < th dose dependent rect. 20 1
940 47.53 precipitation 0.1 270 < th dose dependent rect. 21 22
942 47.54 precipitation 0.1 30 < th dose independent rect. 21 23
943 47.54 wind 7.0 30 < th dose dependent rect. 20 1
945 47.54 humidity 50.0 30 > th dose dependent rect. 20 1
951 47.54 precipitation 0.1 30 < th dose dependent rect. 21 23
974 47.55 atmosphere 1015.0 30 < th dose dependent rect. 20 1