Os05g0569200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0569200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.07 | 0.388 | 9.78 | -0.248 | 0.773 | 1.38 | -0.27 | -0.513 | -0.705 | 21.3 | 23.33 | 57 | -- | -- |
| 68.21 | 0.385 | 9.77 | -0.168 | 0.772 | 1.32 | -0.227 | -- | -0.681 | 21.2 | 23.28 | 57 | -- | -- |
| 68.31 | 0.385 | 9.78 | -0.215 | 0.773 | 1.35 | -- | -0.37 | -0.697 | 21.2 | 23.3 | 58 | -- | -- |
| 68.39 | 0.385 | 9.77 | -0.16 | 0.775 | 1.32 | -- | -- | -0.68 | 21.2 | 23.27 | 57 | -- | -- |
| 81.31 | 0.42 | 9.78 | -0.434 | -- | 1.58 | -- | -1.29 | -0.753 | -- | 23.51 | 413 | -- | -- |
| 96.5 | 0.461 | 9.73 | 0.1 | 0.951 | -- | 0.352 | -- | -0.493 | 18.8 | -- | -- | -- | -- |
| 96.8 | 0.461 | 9.73 | 0.0938 | 0.952 | -- | -- | -- | -0.493 | 18.9 | -- | -- | -- | -- |
| 82.06 | 0.422 | 9.75 | -0.199 | -- | 1.47 | -- | -- | -0.687 | -- | 23.61 | 406 | -- | -- |
| 69.02 | 0.387 | 9.77 | -- | 0.772 | 1.27 | -- | -- | -0.654 | 21.1 | 23.34 | 57 | -- | -- |
| 144.27 | 0.561 | 9.71 | 0.0735 | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
| 97.04 | 0.461 | 9.73 | -- | 0.95 | -- | -- | -- | -0.503 | 18.9 | -- | -- | -- | -- |
| 83 | 0.424 | 9.74 | -- | -- | 1.44 | -- | -- | -0.642 | -- | 24.05 | 405 | -- | -- |
| 144.42 | 0.561 | 9.71 | -- | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 68.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 68.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 68.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 5 | 68.69 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 7 | 69.03 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 12 | 69.64 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 20 | 69.83 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 21 | 69.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 30 | 70.26 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 34 | 70.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 36 | 70.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 40 | 70.40 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 45 | 70.53 | temperature | 25.0 | 30 | > th | dose dependent | no | NA | NA |
| 47 | 70.53 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 58 | 70.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 91 | 70.77 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 19 |
| 116 | 70.86 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 128 | 70.90 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 180 | 71.11 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 187 | 71.15 | temperature | 20.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 247 | 71.38 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 289 | 71.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 357 | 71.93 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 363 | 71.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 367 | 71.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 387 | 72.05 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 396 | 72.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 398 | 72.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 405 | 72.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 406 | 72.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 457 | 72.37 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 458 | 72.37 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 499 | 72.51 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 518 | 72.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 520 | 72.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 571 | 72.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 572 | 72.75 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 641 | 72.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 643 | 72.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 649 | 73.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 12 |
| 665 | 73.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 15 |
| 688 | 73.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 724 | 73.23 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 756 | 73.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 800 | 73.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 828 | 73.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 843 | 73.53 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 865 | 73.58 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 919 | 73.72 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 927 | 73.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 955 | 73.81 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 20 |