Os05g0568000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FAE1.
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Os05g0568000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FAE1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.13 | 0.305 | 13.1 | 1.16 | 0.199 | -0.373 | -0.522 | 0.238 | 0.779 | 4.65 | 25.3 | 301 | -- | -- |
| 42.32 | 0.303 | 13.1 | 1.13 | 0.223 | -0.35 | -0.543 | -- | 0.76 | 4.66 | 25.4 | 303 | -- | -- |
| 42.69 | 0.304 | 13.1 | 1.22 | 0.209 | -0.354 | -- | 0.447 | 0.781 | 4.89 | 25.33 | 301 | -- | -- |
| 43.25 | 0.306 | 13.1 | 1.1 | 0.214 | -0.344 | -- | -- | 0.752 | 5.15 | 25.36 | 301 | -- | -- |
| 44.03 | 0.309 | 13.1 | 1.29 | -- | -0.478 | -- | 0.574 | 0.849 | -- | 25.3 | 301 | -- | -- |
| 47.88 | 0.324 | 13.1 | 0.997 | 0.47 | -- | -0.48 | -- | 0.6 | 5.13 | -- | -- | -- | -- |
| 48.45 | 0.326 | 13.1 | 0.998 | 0.468 | -- | -- | -- | 0.602 | 5.22 | -- | -- | -- | -- |
| 44.74 | 0.312 | 13.1 | 1.14 | -- | -0.457 | -- | -- | 0.803 | -- | 25.3 | 299 | -- | -- |
| 72.66 | 0.399 | 13.2 | -- | 0.39 | -0.17 | -- | -- | 0.57 | 5.78 | 25.36 | 301 | -- | -- |
| 59.89 | 0.362 | 13.1 | 1.01 | -- | -- | -- | -- | 0.614 | -- | -- | -- | -- | -- |
| 74.69 | 0.404 | 13.2 | -- | 0.485 | -- | -- | -- | 0.491 | 5.14 | -- | -- | -- | -- |
| 77.71 | 0.411 | 13.1 | -- | -- | -0.351 | -- | -- | 0.639 | -- | 25.42 | 290 | -- | -- |
| 87.02 | 0.435 | 13.2 | -- | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 6 | 40.97 | temperature | 25.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 7 | 41.07 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 11 | 41.29 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 17 | 41.49 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 21 | 41.55 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 21 |
| 32 | 41.75 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 19 |
| 35 | 41.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 38 | 41.77 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 41 | 41.77 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 47 | 41.84 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 54 | 41.88 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 57 | 41.92 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 83 | 41.99 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 85 | 41.99 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 86 | 41.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 87 | 42.00 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 99 | 42.04 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 14 | 21 |
| 120 | 42.08 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 124 | 42.09 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 126 | 42.09 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 127 | 42.09 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 128 | 42.09 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 129 | 42.10 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 132 | 42.10 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 134 | 42.10 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 158 | 42.12 | temperature | 25.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 161 | 42.13 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 196 | 42.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 204 | 42.17 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 212 | 42.19 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 219 | 42.21 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 17 |
| 283 | 42.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 289 | 42.29 | radiation | 40.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 293 | 42.29 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 328 | 42.33 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 341 | 42.34 | radiation | 10.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 348 | 42.34 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 351 | 42.34 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 359 | 42.36 | temperature | 25.0 | 30 | > th | dose independent | rect. | 17 | 14 |
| 395 | 42.38 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 406 | 42.39 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 408 | 42.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 410 | 42.40 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 434 | 42.40 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 439 | 42.40 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 467 | 42.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 469 | 42.41 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 473 | 42.42 | radiation | 40.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 476 | 42.42 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 567 | 42.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 674 | 42.52 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 682 | 42.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 690 | 42.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 768 | 42.57 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 802 | 42.59 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 845 | 42.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 22 |
| 858 | 42.63 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 879 | 42.64 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 893 | 42.65 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 901 | 42.66 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 902 | 42.66 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 928 | 42.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 931 | 42.67 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 998 | 42.69 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 8 |