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Os05g0567300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GTP-binding protein, HSR1-related domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.78 (0.0337) R2 : 0.709
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.84 (0.0879) R2dC : 0.731 R2C : 0.539
β3 : 1.46 (0.104) R2dE : 0.141 R2E : -0.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.593 (0.0717) R2dN8 : 0.0585 R2N8 : 0.0148
σ : 0.628
deviance : 181.96
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C
peak time of C : 20.6
E
wheather : temperature
threshold : 25.64
memory length : 221
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.11 0.632 9.79 0.0321 2.85 1.48 -0.293 -0.655 -0.603 20.5 25.62 224 22.5 --
181.48 0.627 9.78 0.109 2.83 1.44 -0.25 -- -0.575 20.5 25.7 222 22.3 --
181.3 0.627 9.79 0.0454 2.84 1.47 -- -0.561 -0.602 20.5 25.7 222 22.3 --
181.64 0.628 9.78 0.113 2.84 1.44 -- -- -0.578 20.5 25.66 222 22.3 --
379.69 0.908 9.87 -0.101 -- 2.29 -- 0.733 -1.21 -- 25.3 796 19.4 --
230.62 0.712 9.72 0.329 2.65 -- -0.614 -- -0.349 19.6 -- -- -- --
231.67 0.713 9.72 0.344 2.65 -- -- -- -0.35 19.6 -- -- -- --
231.94 0.712 9.65 0.346 -- -2.64 -- -- -0.349 -- 14.2 1437 22.5 --
181.96 0.628 9.78 -- 2.84 1.46 -- -- -0.593 20.6 25.64 221 22.2 --
607.63 1.15 9.66 0.306 -- -- -- -- -0.391 -- -- -- -- --
234.78 0.717 9.73 -- 2.64 -- -- -- -0.389 19.6 -- -- -- --
234.78 0.714 9.66 -- -- -2.64 -- -- -0.389 -- 2.846 47520 22.4 --
610.09 1.15 9.66 -- -- -- -- -- -0.425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.02 temperature 20.0 270 > th dose dependent rect. 7 6
8 174.94 temperature 25.0 270 > th dose independent rect. 7 7
9 174.99 temperature 20.0 270 > th dose dependent rect. 8 3
14 176.21 temperature 25.0 270 < th dose independent rect. 3 8
17 177.02 temperature 25.0 270 > th dose independent rect. 8 3
33 179.31 temperature 30.0 270 < th dose dependent rect. 2 9
37 179.39 temperature 30.0 270 < th dose dependent rect. 3 7
57 180.35 temperature 20.0 10 > th dose dependent rect. 8 9
61 180.95 temperature 30.0 270 < th dose dependent rect. 2 11
80 181.92 temperature 25.0 270 > th dose dependent rect. 22 14
87 182.09 radiation 1.0 90 > th dose independent rect. 18 14
99 182.36 temperature 10.0 270 > th dose dependent rect. 22 15
114 182.89 radiation 1.0 90 > th dose independent rect. 4 4
124 182.92 wind 7.0 270 < th dose independent rect. 7 20
132 183.11 wind 5.0 90 < th dose independent rect. 5 3
148 183.76 precipitation 0.1 90 < th dose independent rect. 5 3
159 183.76 precipitation 0.1 90 < th dose dependent rect. 5 3
165 183.90 temperature 10.0 90 > th dose independent rect. 5 3
167 183.90 temperature 30.0 90 < th dose independent rect. 5 3
168 183.90 humidity 50.0 90 > th dose independent rect. 5 3
170 183.90 atmosphere 995.0 90 > th dose independent rect. 5 3
171 183.90 atmosphere 1015.0 90 < th dose independent rect. 5 3
172 183.90 temperature 10.0 90 > th dose independent rect. 8 21
178 184.01 temperature 25.0 270 > th dose dependent sin 7 NA
190 184.26 wind 9.0 90 < th dose dependent rect. 5 3
191 184.27 radiation 40.0 90 < th dose independent rect. 5 3
198 184.52 wind 5.0 270 < th dose independent rect. 3 4
203 184.63 temperature 10.0 30 > th dose dependent rect. 5 3
210 184.79 wind 9.0 270 < th dose independent rect. 6 22
217 184.90 radiation 40.0 1440 < th dose dependent rect. 24 5
225 185.06 temperature 25.0 270 > th dose independent rect. 23 14
229 185.17 temperature 25.0 90 > th dose dependent sin 4 NA
232 185.21 precipitation 0.1 90 < th dose independent rect. 8 21
233 185.21 precipitation 0.1 90 < th dose dependent rect. 8 21
241 185.31 temperature 30.0 90 < th dose dependent rect. 5 6
245 185.43 radiation 1.0 90 > th dose dependent rect. 18 13
283 185.86 radiation 1.0 90 > th dose dependent rect. 4 3
301 185.97 precipitation 0.1 270 < th dose independent rect. 3 4
302 185.97 precipitation 0.1 270 < th dose dependent rect. 3 4
306 186.00 temperature 10.0 270 > th dose independent rect. 3 4
308 186.00 temperature 30.0 270 < th dose independent rect. 3 4
309 186.00 humidity 50.0 270 > th dose independent rect. 3 4
311 186.00 atmosphere 995.0 270 > th dose independent rect. 3 4
312 186.00 atmosphere 1015.0 270 < th dose independent rect. 3 4
313 186.00 radiation 40.0 270 < th dose independent rect. 3 4
322 186.11 temperature 10.0 90 > th dose dependent rect. 8 20
375 186.65 radiation 40.0 270 < th dose dependent rect. 3 4
383 186.73 wind 9.0 270 < th dose dependent rect. 3 4
466 187.22 humidity 50.0 10 > th dose independent rect. 8 21
467 187.22 temperature 10.0 270 > th dose independent rect. 6 22
498 187.74 precipitation 0.1 270 < th dose independent rect. 6 22
499 187.74 precipitation 0.1 270 < th dose dependent rect. 6 22
509 187.81 radiation 40.0 270 < th dose dependent rect. 4 2
543 188.29 atmosphere 995.0 90 > th dose independent rect. 8 21
546 188.31 temperature 25.0 270 > th dose independent sin 4 NA
563 188.58 wind 9.0 1440 < th dose independent rect. 5 4
564 188.58 temperature 10.0 1440 > th dose independent rect. 5 4
568 188.58 humidity 50.0 1440 > th dose independent rect. 5 4
570 188.58 atmosphere 995.0 1440 > th dose independent rect. 5 4
571 188.58 atmosphere 1015.0 1440 < th dose independent rect. 5 4
572 188.58 temperature 10.0 1440 > th dose independent rect. 9 20
611 188.86 humidity 90.0 90 < th dose dependent rect. 6 1
637 189.16 wind 7.0 270 < th dose independent rect. 20 7
642 189.22 wind 9.0 270 < th dose independent rect. 7 10
650 189.33 temperature 15.0 90 > th dose independent rect. 17 15
666 189.54 temperature 25.0 270 < th dose independent sin 4 NA
667 189.55 atmosphere 995.0 90 > th dose dependent rect. 5 3
668 189.55 wind 9.0 270 < th dose dependent rect. 7 20
715 190.09 wind 1.0 90 > th dose independent rect. 5 3
732 190.25 humidity 90.0 10 < th dose dependent rect. 6 2
733 190.27 temperature 15.0 270 > th dose independent rect. 3 17
763 190.65 humidity 50.0 90 > th dose dependent rect. 5 3
804 190.92 atmosphere 995.0 270 > th dose independent rect. 17 14
811 190.96 temperature 10.0 270 > th dose independent rect. 20 7
812 190.96 temperature 30.0 270 < th dose independent rect. 20 7
813 190.96 humidity 50.0 270 > th dose independent rect. 20 7
816 190.96 atmosphere 995.0 270 > th dose independent rect. 20 7
817 190.96 radiation 1.0 270 < th dose independent rect. 20 7
823 190.96 atmosphere 1015.0 270 < th dose independent rect. 3 17
825 190.96 radiation 1.0 270 < th dose dependent rect. 20 7
837 191.02 precipitation 0.1 270 < th dose independent rect. 20 7
839 191.02 precipitation 0.1 270 < th dose dependent rect. 20 7
849 191.12 radiation 1.0 90 < th dose dependent sin 10 NA
852 191.14 wind 9.0 270 < th dose dependent rect. 20 7
868 191.26 radiation 40.0 90 < th dose independent rect. 4 19
872 191.27 humidity 90.0 10 < th dose independent rect. 6 2
877 191.30 temperature 10.0 270 > th dose independent rect. 7 9
878 191.30 atmosphere 1015.0 270 < th dose independent rect. 7 9
880 191.30 radiation 40.0 270 < th dose independent rect. 16 15
881 191.31 precipitation 0.1 270 < th dose independent rect. 7 9
886 191.31 precipitation 0.1 270 < th dose dependent rect. 7 9
912 191.44 atmosphere 995.0 10 > th dose dependent rect. 5 18
952 191.59 wind 1.0 90 > th dose independent rect. 8 9
959 191.63 humidity 90.0 10 < th dose dependent rect. 4 4
967 191.70 humidity 50.0 90 > th dose independent rect. 17 15