Os05g0566400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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Os05g0566400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.16 | 0.564 | 10.5 | -1.61 | 1.48 | 0.845 | 2.47 | -1.4 | -0.269 | 8.01 | 0.37 | 40 | -- | -- |
| 149.87 | 0.575 | 10.5 | -1.55 | 1.36 | 0.946 | 1.21 | -- | -0.261 | 7.63 | 0.415 | 47 | -- | -- |
| 153.11 | 0.581 | 10.5 | -1.52 | 1.42 | 0.847 | -- | -0.28 | -0.262 | 8.01 | 0.4145 | 35 | -- | -- |
| 153.62 | 0.581 | 10.5 | -1.51 | 1.43 | 0.838 | -- | -- | -0.26 | 8.03 | 0.4145 | 35 | -- | -- |
| 228.94 | 0.709 | 10.6 | -1.51 | -- | 1.39 | -- | -0.217 | -0.266 | -- | 0.95 | 28 | -- | -- |
| 169.88 | 0.611 | 10.5 | -1.48 | 2.17 | -- | 0.608 | -- | -0.251 | 9.43 | -- | -- | -- | -- |
| 171.21 | 0.613 | 10.5 | -1.46 | 2.17 | -- | -- | -- | -0.25 | 9.46 | -- | -- | -- | -- |
| 229.25 | 0.708 | 10.6 | -1.51 | -- | 1.39 | -- | -- | -0.265 | -- | 0.9394 | 28 | -- | -- |
| 213.62 | 0.684 | 10.5 | -- | 1.49 | 0.742 | -- | -- | -0.0915 | 8.34 | 0.4145 | 35 | -- | -- |
| 447.11 | 0.988 | 10.6 | -1.47 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 227.45 | 0.705 | 10.5 | -- | 2.17 | -- | -- | -- | -0.0869 | 9.51 | -- | -- | -- | -- |
| 289.17 | 0.795 | 10.5 | -- | -- | 1.38 | -- | -- | -0.0995 | -- | 1.011 | 32 | -- | -- |
| 504.47 | 1.05 | 10.5 | -- | -- | -- | -- | -- | -0.0793 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.54 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 8 | 140.75 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 16 | 141.48 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 23 | 141.97 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 24 | 142.03 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 27 | 142.38 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 36 | 142.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 40 | 142.87 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 52 | 143.09 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 59 | 143.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 63 | 143.32 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 91 | 143.85 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 95 | 143.92 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 112 | 144.21 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 9 |
| 113 | 144.22 | humidity | 60.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 122 | 144.35 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 173 | 144.85 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 175 | 144.88 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 6 |
| 180 | 144.95 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 181 | 144.95 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 187 | 144.95 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 188 | 144.95 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 201 | 145.08 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 216 | 145.21 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 241 | 145.34 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 249 | 145.37 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 294 | 145.68 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 20 |
| 295 | 145.68 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 324 | 145.80 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 370 | 146.18 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 371 | 146.18 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 373 | 146.19 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 383 | 146.27 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 385 | 146.29 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 410 | 146.37 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 411 | 146.39 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 470 | 146.40 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 472 | 146.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 21 |
| 478 | 146.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 479 | 146.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 481 | 146.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 485 | 146.41 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 506 | 146.51 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 515 | 146.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 540 | 146.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 546 | 146.66 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 553 | 146.67 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 584 | 146.82 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 602 | 146.87 | humidity | 80.0 | 720 | > th | dose independent | sin | 18 | NA |
| 603 | 146.88 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 641 | 147.15 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 648 | 147.18 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 649 | 147.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 23 |
| 658 | 147.22 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 675 | 147.28 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 21 |
| 677 | 147.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 12 |
| 679 | 147.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 681 | 147.29 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 716 | 147.48 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 17 |
| 723 | 147.52 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 776 | 147.70 | humidity | 80.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 787 | 147.74 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 21 |
| 806 | 147.79 | humidity | 80.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 893 | 147.85 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 925 | 147.95 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 18 | 14 |
| 928 | 147.95 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 961 | 148.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 981 | 148.10 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 22 |
| 985 | 148.10 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 992 | 148.12 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 18 | 11 |