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Os05g0565400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF561 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.038) R2 : 0.88
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.95 (0.114) R2dC : 0.23 R2C : 0.498
β3 : -3.69 (0.121) R2dE : 0.326 R2E : 0.604
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.835 (0.0802) R2dN8 : 0.0362 R2N8 : 0.0508
σ : 0.711
deviance : 233.33
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C
peak time of C : 17.6
E
wheather : temperature
threshold : 20.25
memory length : 296
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.07
open length of G : 6.48

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.44 0.709 12.8 -0.12 2.88 -3.54 1.33 1.73 -0.843 17.5 20.22 286 2.96 6.95
230.09 0.706 12.8 -0.25 2.88 -3.73 0.823 -- -0.842 17.6 20.25 302 2.98 6.55
228.37 0.704 12.8 -0.113 2.91 -3.62 -- 1.5 -0.783 17.8 20.31 306 2.92 6.5
231.62 0.709 12.8 -0.26 2.91 -3.67 -- -- -0.845 17.6 20.29 301 3 6.54
424.53 0.96 12.7 0.579 -- -4.71 -- 3.36 -0.433 -- 19.4 311 1.5 7.68
443.72 0.988 12.9 -0.503 5.1 -- 0.0554 -- -1.14 19.2 -- -- -- --
443.73 0.986 12.9 -0.504 5.1 -- -- -- -1.14 19.2 -- -- -- --
398.49 0.93 12.6 0.337 -- -5 -- -- -0.474 -- 19.4 327 1.23 7.82
233.33 0.711 12.8 -- 2.95 -3.69 -- -- -0.835 17.6 20.25 296 3.07 6.48
1818.38 1.99 12.8 -0.599 -- -- -- -- -1.23 -- -- -- -- --
450.42 0.993 12.9 -- 5.11 -- -- -- -1.08 19.2 -- -- -- --
373.51 0.9 12.7 -- -- -5.1 -- -- -0.667 -- 18.5 326 1.25 7.75
1827.85 2 12.8 -- -- -- -- -- -1.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.91 temperature 20.0 270 > th dose independent rect. 3 7
2 236.55 temperature 20.0 270 > th dose independent rect. 4 5
4 244.76 temperature 15.0 270 > th dose dependent rect. 3 6
25 272.96 temperature 20.0 270 > th dose independent rect. 4 17
26 273.97 temperature 10.0 270 > th dose dependent rect. 17 16
38 280.23 temperature 20.0 10 > th dose dependent sin 7 NA
44 283.02 temperature 20.0 270 > th dose independent rect. 17 16
49 285.63 temperature 30.0 10 < th dose dependent sin 6 NA
108 301.09 temperature 20.0 10 > th dose dependent rect. 5 5
121 302.66 temperature 20.0 10 > th dose dependent rect. 20 14
152 307.27 temperature 20.0 10 > th dose dependent rect. 5 7
233 315.57 temperature 30.0 270 < th dose dependent rect. 22 6
237 315.95 radiation 1.0 270 < th dose dependent rect. 21 14
304 319.27 radiation 1.0 270 < th dose dependent sin 10 NA
407 325.53 temperature 30.0 90 < th dose dependent rect. 23 12
410 325.77 humidity 70.0 270 > th dose independent rect. 4 5
413 325.88 temperature 25.0 30 > th dose independent sin 7 NA
443 327.16 wind 9.0 270 < th dose independent rect. 9 19
444 327.16 precipitation 0.1 270 < th dose independent rect. 9 19
445 327.16 precipitation 0.1 270 < th dose dependent rect. 9 19
457 328.20 wind 7.0 270 < th dose independent rect. 21 7
460 328.31 temperature 20.0 270 > th dose independent sin 7 NA
465 328.52 temperature 20.0 270 < th dose independent sin 7 NA
470 328.58 radiation 30.0 270 < th dose independent rect. 4 5
471 328.60 wind 9.0 270 < th dose independent rect. 4 5
472 328.60 temperature 10.0 270 > th dose independent rect. 4 5
475 328.60 atmosphere 995.0 270 > th dose independent rect. 4 5
476 328.60 atmosphere 1015.0 270 < th dose independent rect. 4 5
477 328.60 temperature 10.0 270 > th dose independent rect. 9 19
480 328.72 precipitation 0.1 270 < th dose independent rect. 4 5
481 328.72 precipitation 0.1 270 < th dose dependent rect. 4 5
484 328.85 temperature 30.0 270 < th dose independent rect. 4 5
505 329.61 radiation 30.0 270 < th dose independent rect. 4 18
521 330.24 temperature 25.0 90 < th dose dependent rect. 1 10
552 331.16 radiation 30.0 270 < th dose independent rect. 17 16
567 331.45 atmosphere 1015.0 270 < th dose independent rect. 4 17
570 331.59 radiation 40.0 270 < th dose independent rect. 13 10
571 331.59 wind 9.0 270 < th dose independent rect. 10 17
581 331.92 temperature 10.0 270 > th dose independent rect. 21 7
582 331.92 temperature 30.0 270 < th dose independent rect. 21 7
583 331.92 humidity 50.0 270 > th dose independent rect. 21 7
586 331.92 atmosphere 995.0 270 > th dose independent rect. 21 7
587 331.92 radiation 1.0 270 < th dose independent rect. 21 7
594 331.92 radiation 1.0 270 < th dose dependent rect. 21 7
601 332.04 temperature 20.0 270 < th dose independent rect. 22 13
603 332.12 precipitation 0.1 270 < th dose independent rect. 10 17
604 332.12 precipitation 0.1 270 < th dose dependent rect. 10 17
608 332.31 precipitation 0.1 270 < th dose independent rect. 21 7
609 332.31 precipitation 0.1 270 < th dose dependent rect. 21 7
618 332.57 wind 9.0 270 < th dose dependent rect. 4 5
627 332.78 temperature 25.0 30 < th dose independent sin 7 NA
633 333.00 wind 9.0 270 < th dose independent rect. 3 7
634 333.02 atmosphere 995.0 270 > th dose independent rect. 17 16
640 333.20 humidity 50.0 270 > th dose independent rect. 3 7
643 333.24 wind 9.0 270 < th dose independent rect. 9 8
645 333.25 atmosphere 995.0 270 > th dose independent rect. 3 7
646 333.25 atmosphere 1015.0 270 < th dose independent rect. 3 7
647 333.25 temperature 10.0 270 > th dose independent rect. 10 17
669 333.79 temperature 10.0 270 > th dose independent rect. 9 8
670 333.79 atmosphere 1015.0 270 < th dose independent rect. 9 8
674 334.02 precipitation 0.1 270 < th dose independent rect. 9 8
675 334.02 precipitation 0.1 270 < th dose dependent rect. 9 8
677 334.07 temperature 30.0 90 < th dose dependent rect. 23 16
679 334.15 wind 1.0 270 > th dose independent rect. 9 8
684 334.16 precipitation 0.1 270 < th dose independent rect. 3 7
685 334.16 precipitation 0.1 270 < th dose dependent rect. 3 7
741 335.57 wind 9.0 270 < th dose independent rect. 17 16
755 335.80 wind 9.0 270 < th dose independent rect. 4 17
757 335.84 wind 1.0 270 > th dose independent rect. 9 19
776 336.20 radiation 1.0 270 > th dose independent rect. 18 14
804 336.98 radiation 1.0 270 < th dose independent rect. 21 14
810 337.27 radiation 1.0 270 > th dose independent rect. 5 3
817 337.51 precipitation 0.1 270 < th dose independent rect. 4 17
819 337.51 precipitation 0.1 270 < th dose dependent rect. 4 17
820 337.53 temperature 30.0 270 < th dose independent rect. 3 7
826 337.56 radiation 1.0 270 > th dose independent sin 11 NA
835 337.76 temperature 15.0 270 > th dose independent rect. 14 9
856 337.91 atmosphere 995.0 270 > th dose independent rect. 4 17
860 337.98 radiation 1.0 270 < th dose independent sin 11 NA
863 337.98 temperature 10.0 10 > th dose dependent rect. 6 17
865 338.07 temperature 25.0 10 < th dose dependent rect. 24 12
870 338.16 radiation 30.0 90 < th dose independent rect. 6 17
882 338.38 radiation 1.0 270 > th dose independent rect. 17 16
885 338.39 humidity 50.0 270 > th dose independent rect. 17 16
888 338.42 temperature 10.0 90 > th dose dependent rect. 6 17
900 338.47 radiation 40.0 270 < th dose dependent rect. 4 18
944 339.45 radiation 40.0 90 < th dose independent rect. 6 5
954 339.62 radiation 40.0 90 < th dose dependent rect. 23 7
959 339.68 precipitation 0.1 90 < th dose independent rect. 23 7
960 339.68 precipitation 0.1 90 < th dose dependent rect. 23 7
961 339.70 radiation 1.0 90 < th dose independent rect. 23 8
976 339.89 temperature 10.0 90 > th dose independent rect. 23 7
977 339.89 temperature 30.0 90 < th dose independent rect. 23 7
978 339.89 humidity 50.0 90 > th dose independent rect. 23 7
981 339.89 atmosphere 995.0 90 > th dose independent rect. 23 7
982 339.89 radiation 20.0 90 < th dose independent rect. 23 7
986 339.89 radiation 1.0 90 < th dose dependent rect. 23 9
996 340.05 radiation 1.0 90 > th dose independent rect. 5 6
999 340.07 temperature 25.0 720 < th dose dependent rect. 19 10