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Os05g0565000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L18a-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0239) R2 : 0.443
β1 : 1.36 (0.0874) R2dD : 0.306 R2D : 0.287
β2 : 0.697 (0.0621) R2dC : 0.154 R2C : 0.144
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0736 (0.0509) R2dN8 : 0.00342 R2N8 : -0.00971
σ : 0.449
deviance : 91.74
__
_____
C
peak time of C : 17.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.03 0.426 11.6 1.34 0.673 -0.391 1.25 -1.02 0.0687 18.1 39.72 10 -- --
83.97 0.427 11.6 1.37 0.669 -0.371 1.1 -- 0.061 18 41.16 14 -- --
85.8 0.431 11.6 1.33 0.679 -0.389 -- -0.881 0.0727 18 41.34 8 -- --
87.11 0.438 11.6 1.35 0.675 -0.382 -- -- 0.0769 18 41.34 8 -- --
109.52 0.487 11.6 1.34 -- -0.426 -- -0.824 0.0544 -- 41.55 4 -- --
88.36 0.441 11.6 1.36 0.689 -- 1.17 -- 0.0682 17.4 -- -- -- --
91.74 0.449 11.6 1.36 0.697 -- -- -- 0.0736 17.3 -- -- -- --
110.33 0.489 11.6 1.32 -- -0.435 -- -- 0.0614 -- 41.57 2 -- --
134.88 0.544 11.7 -- 0.654 -0.413 -- -- -0.0716 18.1 40.02 14 -- --
117.05 0.506 11.6 1.33 -- -- -- -- 0.0563 -- -- -- -- --
140.3 0.554 11.7 -- 0.674 -- -- -- -0.0776 17.4 -- -- -- --
141.4 0.554 11.7 -- -- -0.645 -- -- -0.163 -- 20 713 -- --
163.95 0.598 11.7 -- -- -- -- -- -0.0917 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.69 temperature 10.0 43200 > th dose independent rect. 10 6
4 78.09 temperature 15.0 270 > th dose dependent rect. 9 1
6 78.28 temperature 15.0 10 > th dose dependent rect. 9 6
9 78.43 wind 3.0 4320 > th dose independent rect. 8 1
21 78.69 humidity 90.0 10 < th dose independent rect. 2 7
26 78.81 wind 3.0 4320 < th dose independent rect. 8 1
34 79.24 radiation 40.0 10 < th dose independent rect. 4 16
36 79.27 radiation 1.0 1440 < th dose independent rect. 11 1
37 79.27 radiation 1.0 1440 < th dose dependent rect. 11 1
39 79.38 radiation 10.0 1440 > th dose independent rect. 11 2
43 79.47 temperature 10.0 43200 > th dose independent rect. 10 3
45 79.54 radiation 10.0 1440 < th dose dependent rect. 10 5
46 79.54 atmosphere 1005.0 10 > th dose dependent rect. 3 6
53 79.65 radiation 20.0 1440 < th dose dependent rect. 12 1
56 79.68 wind 5.0 4320 < th dose dependent rect. 8 1
58 79.70 atmosphere 1005.0 270 > th dose dependent rect. 1 5
59 79.72 temperature 20.0 30 > th dose dependent rect. 9 3
71 79.82 wind 3.0 4320 > th dose independent rect. 5 4
86 79.88 temperature 10.0 10 > th dose dependent rect. 9 18
87 79.89 radiation 40.0 90 < th dose independent rect. 3 16
88 79.89 radiation 40.0 10 < th dose independent rect. 12 21
89 79.90 wind 1.0 4320 > th dose dependent rect. 8 1
93 79.92 atmosphere 1005.0 10 < th dose dependent rect. 24 10
109 80.02 wind 1.0 30 > th dose independent rect. 9 6
111 80.03 radiation 1.0 270 > th dose dependent rect. 9 1
117 80.04 atmosphere 1005.0 90 < th dose dependent rect. 24 9
118 80.05 humidity 90.0 720 > th dose dependent rect. 21 5
133 80.12 wind 3.0 4320 < th dose independent rect. 5 4
136 80.13 radiation 1.0 10 > th dose independent rect. 9 6
154 80.20 humidity 50.0 30 > th dose independent rect. 9 6
162 80.22 temperature 15.0 10 > th dose independent rect. 15 18
173 80.27 temperature 10.0 10 > th dose independent rect. 9 6
175 80.27 atmosphere 995.0 10 > th dose independent rect. 9 6
176 80.27 atmosphere 1015.0 10 < th dose independent rect. 9 6
177 80.27 precipitation 0.1 10 < th dose independent rect. 9 6
179 80.27 precipitation 0.1 10 < th dose dependent rect. 9 6
195 80.32 temperature 10.0 10 > th dose dependent rect. 3 6
200 80.34 temperature 10.0 1440 > th dose independent rect. 10 6
203 80.34 temperature 10.0 1440 > th dose independent rect. 16 18
221 80.43 humidity 50.0 270 > th dose independent rect. 9 1
225 80.43 atmosphere 1005.0 270 > th dose dependent rect. 4 1
231 80.45 wind 9.0 30 < th dose independent rect. 15 18
238 80.46 wind 5.0 30 < th dose independent rect. 3 6
256 80.50 radiation 40.0 10 < th dose independent rect. 15 18
257 80.51 radiation 20.0 1440 < th dose independent rect. 12 1
271 80.53 wind 9.0 30 < th dose independent rect. 9 6
295 80.58 temperature 25.0 10 > th dose independent rect. 1 8
302 80.60 radiation 1.0 270 > th dose dependent rect. 8 3
304 80.61 temperature 10.0 270 > th dose independent rect. 9 1
305 80.61 atmosphere 995.0 270 > th dose independent rect. 9 1
306 80.61 atmosphere 1015.0 270 < th dose independent rect. 9 1
307 80.61 precipitation 0.1 270 < th dose independent rect. 9 1
308 80.61 precipitation 0.1 10 < th dose independent rect. 3 6
309 80.61 temperature 10.0 270 > th dose independent rect. 10 23
310 80.61 precipitation 0.1 270 < th dose dependent rect. 9 1
311 80.61 precipitation 0.1 10 < th dose dependent rect. 3 6
320 80.64 radiation 1.0 10 > th dose dependent rect. 9 6
324 80.65 precipitation 0.1 10 < th dose independent rect. 15 18
325 80.65 radiation 1.0 90 > th dose dependent rect. 8 6
326 80.65 precipitation 0.1 10 < th dose dependent rect. 15 18
327 80.66 wind 1.0 270 > th dose independent rect. 9 1
328 80.66 wind 9.0 270 < th dose independent rect. 9 1
333 80.67 radiation 40.0 10 < th dose independent rect. 23 21
344 80.70 atmosphere 1005.0 10 > th dose independent rect. 3 6
353 80.71 precipitation 0.1 10 < th dose independent rect. 9 18
356 80.71 precipitation 0.1 10 < th dose dependent rect. 9 18
378 80.78 radiation 10.0 1440 < th dose independent rect. 14 2
381 80.78 temperature 10.0 10 > th dose dependent rect. 9 14
386 80.80 radiation 40.0 10 < th dose independent rect. 6 14
391 80.81 atmosphere 995.0 10 > th dose independent rect. 15 18
403 80.83 wind 5.0 4320 < th dose dependent rect. 1 9
408 80.85 radiation 1.0 270 > th dose independent rect. 9 1
415 80.87 humidity 50.0 30 > th dose independent rect. 9 18
453 80.93 radiation 30.0 90 < th dose independent rect. 3 6
456 80.93 wind 5.0 4320 < th dose dependent rect. 6 3
457 80.93 wind 5.0 4320 < th dose dependent rect. 5 5
466 80.95 temperature 10.0 10 > th dose independent rect. 3 6
468 80.95 temperature 30.0 10 < th dose independent rect. 3 6
469 80.95 humidity 50.0 10 > th dose independent rect. 3 6
471 80.95 atmosphere 995.0 10 > th dose independent rect. 3 6
472 80.95 atmosphere 1015.0 10 < th dose independent rect. 3 6
473 80.95 temperature 10.0 10 > th dose independent rect. 9 18
476 80.96 atmosphere 1015.0 10 < th dose independent rect. 15 18
504 80.99 wind 5.0 4320 < th dose dependent rect. 23 11
506 81.00 humidity 80.0 1440 > th dose independent rect. 12 2
512 81.00 radiation 30.0 270 > th dose dependent rect. 8 2
544 81.03 radiation 40.0 270 > th dose independent rect. 9 1
550 81.03 atmosphere 1015.0 30 < th dose dependent rect. 9 6
553 81.03 humidity 90.0 10 < th dose dependent rect. 15 18
568 81.06 radiation 40.0 10 < th dose independent rect. 12 8
572 81.06 radiation 40.0 10 < th dose independent rect. 21 23
573 81.06 wind 1.0 4320 > th dose dependent rect. 6 3
574 81.06 wind 1.0 4320 > th dose dependent rect. 5 5
577 81.07 radiation 40.0 10 < th dose independent rect. 23 23
585 81.09 wind 9.0 14400 < th dose independent rect. 22 5
599 81.10 humidity 90.0 720 > th dose independent rect. 21 5
601 81.10 atmosphere 995.0 10 > th dose independent rect. 9 18
607 81.11 wind 9.0 270 < th dose independent rect. 10 23
620 81.12 wind 9.0 10 < th dose independent rect. 9 18
653 81.15 wind 1.0 30 > th dose independent rect. 2 7
654 81.15 temperature 10.0 1440 > th dose independent rect. 3 7
657 81.15 atmosphere 995.0 1440 > th dose independent rect. 3 7
658 81.15 wind 5.0 270 < th dose independent rect. 23 9
659 81.15 temperature 10.0 1440 > th dose independent rect. 10 17
662 81.15 radiation 40.0 10 > th dose independent rect. 13 23
679 81.17 humidity 90.0 10 < th dose independent rect. 9 6
728 81.22 wind 9.0 10 < th dose dependent rect. 3 6
733 81.24 humidity 50.0 30 > th dose independent rect. 9 3
759 81.28 humidity 90.0 720 < th dose independent rect. 21 3
776 81.30 wind 5.0 270 < th dose independent rect. 4 1
777 81.30 wind 1.0 30 > th dose independent rect. 9 3
789 81.31 atmosphere 1005.0 270 > th dose independent rect. 24 7
794 81.31 humidity 80.0 1440 > th dose dependent rect. 12 2
805 81.32 radiation 40.0 4320 < th dose independent rect. 16 5
819 81.33 wind 1.0 4320 > th dose dependent rect. 1 9
822 81.34 atmosphere 1015.0 270 < th dose dependent rect. 9 1
828 81.35 radiation 30.0 90 < th dose independent rect. 23 10
836 81.37 radiation 1.0 10 > th dose independent rect. 9 3
849 81.38 precipitation 0.1 270 < th dose independent rect. 10 22
866 81.38 precipitation 0.1 270 < th dose dependent rect. 10 22
882 81.40 wind 1.0 4320 > th dose dependent rect. 23 11
885 81.41 wind 1.0 270 > th dose independent rect. 3 2
888 81.41 radiation 40.0 90 < th dose independent rect. 21 23
906 81.42 radiation 1.0 10 > th dose dependent rect. 9 9
917 81.42 radiation 10.0 1440 < th dose dependent rect. 9 18
944 81.43 radiation 10.0 1440 < th dose dependent rect. 9 16
947 81.43 temperature 10.0 30 > th dose dependent rect. 20 19
958 81.44 wind 1.0 30 > th dose independent rect. 9 18
966 81.44 radiation 10.0 1440 < th dose dependent rect. 9 13
973 81.45 humidity 50.0 10 > th dose independent rect. 15 18
975 81.45 temperature 15.0 30 > th dose independent rect. 12 21