Os05g0564100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0564100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.69 | 0.341 | 8.71 | 0.268 | 0.563 | -1.38 | -0.762 | -0.468 | 0.044 | 16.7 | 27.43 | 30 | -- | -- |
| 53 | 0.339 | 8.72 | 0.224 | 0.56 | -1.31 | -0.616 | -- | 0.0518 | 16.6 | 27.39 | 43 | -- | -- |
| 53.95 | 0.342 | 8.72 | 0.213 | 0.581 | -1.33 | -- | -0.102 | 0.0364 | 16.5 | 27.24 | 30 | -- | -- |
| 53.48 | 0.341 | 8.72 | 0.194 | 0.581 | -1.33 | -- | -- | 0.0364 | 16.3 | 27.12 | 70 | -- | -- |
| 65.3 | 0.376 | 8.72 | 0.136 | -- | -1.7 | -- | -0.205 | -0.0412 | -- | 28.78 | 77 | -- | -- |
| 78.94 | 0.417 | 8.65 | 0.524 | 0.924 | -- | -0.338 | -- | 0.323 | 15.6 | -- | -- | -- | -- |
| 79.28 | 0.417 | 8.65 | 0.518 | 0.922 | -- | -- | -- | 0.321 | 15.6 | -- | -- | -- | -- |
| 65.17 | 0.376 | 8.73 | 0.06 | -- | -1.77 | -- | -- | -0.0598 | -- | 28.78 | 77 | -- | -- |
| 54.32 | 0.343 | 8.72 | -- | 0.556 | -1.38 | -- | -- | 0.00225 | 16.2 | 27.18 | 76 | -- | -- |
| 126.58 | 0.526 | 8.65 | 0.48 | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
| 86.37 | 0.435 | 8.67 | -- | 0.912 | -- | -- | -- | 0.263 | 15.6 | -- | -- | -- | -- |
| 65.26 | 0.376 | 8.74 | -- | -- | -1.79 | -- | -- | -0.0703 | -- | 28.75 | 79 | -- | -- |
| 132.65 | 0.538 | 8.66 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 50.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 4 | 51.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 8 | 51.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 11 | 52.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 15 | 52.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 18 | 53.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 20 | 53.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 22 | 53.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 27 | 53.78 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 30 | 53.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 32 | 53.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 37 | 53.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 38 | 53.97 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 40 | 54.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 41 | 54.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 46 | 54.17 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 53 | 54.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 75 | 54.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 87 | 54.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 95 | 54.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 104 | 54.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 225 | 55.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 291 | 56.32 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 448 | 57.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 466 | 57.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 564 | 58.23 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 616 | 58.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 625 | 58.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 676 | 58.76 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 731 | 59.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 773 | 59.26 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 794 | 59.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 804 | 59.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 858 | 59.61 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 22 |
| 875 | 59.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 890 | 59.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 916 | 59.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 925 | 59.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 13 |