Os05g0563900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os05g0563900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.91 | 0.717 | 9.43 | -1.43 | 2.93 | -1.53 | 3.17 | 2.03 | -0.889 | 12.1 | 2.69 | 90 | 14.4 | -- |
| 239.12 | 0.72 | 9.42 | -1.35 | 3 | -1.7 | 2.79 | -- | -0.868 | 12 | 2.845 | 84 | 15 | -- |
| 267.81 | 0.762 | 9.45 | -1.39 | 3.2 | -1.64 | -- | 1.05 | -0.903 | 12 | 2.689 | 87 | 15.9 | -- |
| 264.78 | 0.758 | 9.4 | -1.29 | 3.07 | -1.63 | -- | -- | -0.86 | 12 | 2.78 | 84 | 15.2 | -- |
| 506.48 | 1.05 | 9.51 | -0.913 | -- | -3.79 | -- | 3.65 | -0.87 | -- | 6.788 | 438 | 13.2 | -- |
| 273.63 | 0.775 | 9.39 | -1.33 | 3.55 | -- | 2.34 | -- | -0.856 | 11.4 | -- | -- | -- | -- |
| 297.13 | 0.807 | 9.38 | -1.23 | 3.54 | -- | -- | -- | -0.848 | 11.3 | -- | -- | -- | -- |
| 278.37 | 0.777 | 9.49 | -1.3 | -- | -3.4 | -- | -- | -0.95 | -- | 15.84 | 129 | 8.29 | -- |
| 306.43 | 0.815 | 9.39 | -- | 3.15 | -1.48 | -- | -- | -0.752 | 11.9 | 3.17 | 84 | 15.4 | -- |
| 1082.16 | 1.54 | 9.47 | -1.32 | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
| 337.24 | 0.859 | 9.35 | -- | 3.55 | -- | -- | -- | -0.711 | 11.4 | -- | -- | -- | -- |
| 321.59 | 0.835 | 9.46 | -- | -- | -3.42 | -- | -- | -0.801 | -- | 19.99 | 133 | 8.18 | -- |
| 1128.4 | 1.57 | 9.44 | -- | -- | -- | -- | -- | -0.736 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.46 | radiation | 1.0 | 30 | < th | dose dependent | sin | 19 | NA |
| 6 | 235.82 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 19 | 237.15 | radiation | 1.0 | 90 | < th | dose independent | sin | 21 | NA |
| 35 | 237.84 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 73 | 239.53 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 22 |
| 82 | 239.85 | temperature | 25.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 97 | 240.34 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 105 | 240.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 10 |
| 124 | 241.09 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 22 |
| 125 | 241.14 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 8 |
| 145 | 241.69 | radiation | 1.0 | 30 | < th | dose independent | rect. | 6 | 15 |
| 158 | 242.00 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 175 | 242.39 | temperature | 25.0 | 90 | > th | dose independent | rect. | 18 | 18 |
| 176 | 242.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 186 | 242.62 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 194 | 242.83 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 10 |
| 211 | 243.07 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 20 |
| 227 | 243.19 | humidity | 80.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 233 | 243.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 8 |
| 268 | 243.84 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 6 |
| 300 | 244.28 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 16 |
| 327 | 244.51 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 331 | 244.53 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 14 |
| 337 | 244.56 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 344 | 244.60 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 363 | 244.76 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 373 | 244.88 | temperature | 25.0 | 270 | < th | dose independent | rect. | 20 | 8 |
| 381 | 244.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 12 |
| 397 | 245.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 459 | 245.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 461 | 245.70 | temperature | 25.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 482 | 245.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 487 | 245.88 | wind | 9.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 488 | 245.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 491 | 245.91 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 6 |
| 525 | 246.13 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 14 |
| 544 | 246.30 | wind | 9.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 548 | 246.31 | wind | 7.0 | 30 | < th | dose independent | rect. | 18 | 3 |
| 556 | 246.36 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 5 |
| 591 | 246.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 593 | 246.56 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 12 |
| 608 | 246.65 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 18 | 22 |
| 612 | 246.70 | wind | 9.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 625 | 246.78 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 656 | 246.98 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 664 | 247.02 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 707 | 247.21 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 18 | 3 |
| 795 | 247.57 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 10 |
| 803 | 247.60 | radiation | 10.0 | 30 | > th | dose independent | sin | 15 | NA |
| 806 | 247.61 | wind | 9.0 | 30 | < th | dose dependent | rect. | 18 | 3 |
| 833 | 247.75 | temperature | 25.0 | 270 | < th | dose independent | sin | 11 | NA |
| 847 | 247.85 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 1 |
| 903 | 248.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 959 | 248.32 | radiation | 10.0 | 90 | > th | dose independent | sin | 19 | NA |