FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0563500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0321) R2 : 0.748
β1 : 2.54 (0.118) R2dD : 0.268 R2D : 0.231
β2 : 1.68 (0.0994) R2dC : 0.226 R2C : 0.34
β3 : 1.19 (0.114) R2dE : 0.0864 R2E : 0.243
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.73 (0.0687) R2dN8 : 0.0834 R2N8 : -0.00771
σ : 0.6
deviance : 165.82
__
_____
C
peak time of C : 17.6
E
wheather : wind
threshold : 6.622
memory length : 245
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.03
open length of G : 20.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.59 0.605 5.47 2.57 1.61 1.19 0.581 -0.247 0.722 17.5 6.957 266 7 20.1
165.5 0.599 5.47 2.55 1.64 1.19 0.425 -- 0.715 17.5 6.741 257 7.02 20.2
165.9 0.6 5.47 2.55 1.63 1.22 -- 0.182 0.725 17.5 6.77 251 7.05 20.2
165.82 0.6 5.47 2.54 1.68 1.19 -- -- 0.73 17.6 6.622 245 7.03 20.3
212.18 0.678 5.4 2.82 -- 2.4 -- 1.74 0.835 -- 9.9 334 7 18.4
199.79 0.663 5.5 2.7 2.26 -- 0.771 -- 0.666 18 -- -- -- --
201.24 0.664 5.5 2.69 2.27 -- -- -- 0.669 18 -- -- -- --
206.26 0.669 5.42 2.68 -- 2.41 -- -- 0.818 -- 8.165 342 6.85 18.4
288.58 0.791 5.45 -- 1.76 1.59 -- -- 0.681 17.7 7.407 31896 6.32 21.1
467.37 1.01 5.46 2.62 -- -- -- -- 0.617 -- -- -- -- --
391.95 0.926 5.57 -- 2.23 -- -- -- 0.369 18 -- -- -- --
278.52 0.777 5.46 -- -- 3.85 -- -- 0.834 -- 8.207 13362 6.42 18
648.85 1.19 5.53 -- -- -- -- -- 0.326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.74 wind 7.0 270 < th dose independent rect. 7 20
2 166.86 wind 9.0 270 < th dose dependent rect. 7 20
3 167.81 wind 7.0 30 < th dose independent rect. 9 19
6 167.96 wind 9.0 270 < th dose independent rect. 5 23
8 168.12 wind 9.0 30 < th dose dependent rect. 9 19
16 168.82 temperature 15.0 270 > th dose independent rect. 7 20
29 170.28 atmosphere 1000.0 30 > th dose independent rect. 9 19
51 171.64 atmosphere 995.0 270 > th dose dependent rect. 4 1
52 171.72 atmosphere 1000.0 270 > th dose independent rect. 22 4
55 171.84 precipitation 0.1 270 < th dose independent rect. 4 1
56 171.84 precipitation 0.1 270 < th dose dependent rect. 4 1
57 171.87 precipitation 0.1 270 < th dose independent rect. 3 4
58 171.87 precipitation 0.1 270 < th dose dependent rect. 3 4
59 171.88 temperature 10.0 90 > th dose dependent rect. 4 4
70 172.24 wind 7.0 270 < th dose independent rect. 4 1
73 172.29 radiation 1.0 270 < th dose dependent rect. 4 1
76 172.33 temperature 10.0 270 > th dose independent rect. 4 1
78 172.33 temperature 30.0 270 < th dose independent rect. 4 1
79 172.33 humidity 50.0 270 > th dose independent rect. 4 1
82 172.33 atmosphere 995.0 270 > th dose independent rect. 4 1
83 172.33 atmosphere 1010.0 270 < th dose independent rect. 4 1
85 172.33 radiation 20.0 270 < th dose independent rect. 4 1
88 172.33 temperature 10.0 270 > th dose independent rect. 5 23
89 172.34 radiation 20.0 270 < th dose dependent rect. 4 1
93 172.37 radiation 1.0 270 < th dose independent rect. 4 1
97 172.52 atmosphere 995.0 90 > th dose dependent rect. 4 4
104 172.73 humidity 70.0 270 > th dose independent rect. 3 4
110 172.80 temperature 10.0 30 > th dose dependent rect. 9 19
112 172.86 wind 7.0 270 < th dose independent rect. 3 4
115 172.89 radiation 20.0 270 < th dose independent rect. 3 4
117 172.91 atmosphere 1000.0 270 > th dose independent rect. 23 2
118 172.93 precipitation 0.1 30 < th dose independent rect. 4 5
119 172.93 precipitation 0.1 30 < th dose dependent rect. 4 5
122 172.97 temperature 10.0 270 > th dose independent rect. 3 4
124 172.97 temperature 30.0 270 < th dose independent rect. 3 4
125 172.97 humidity 50.0 270 > th dose independent rect. 3 4
127 172.97 atmosphere 995.0 270 > th dose independent rect. 3 4
128 172.97 atmosphere 1015.0 270 < th dose independent rect. 3 4
133 173.01 wind 9.0 30 < th dose independent rect. 4 5
134 173.01 temperature 10.0 30 > th dose independent rect. 4 5
136 173.01 temperature 30.0 30 < th dose independent rect. 4 5
137 173.01 humidity 50.0 30 > th dose independent rect. 4 5
139 173.01 atmosphere 995.0 30 > th dose independent rect. 4 5
140 173.01 atmosphere 1015.0 30 < th dose independent rect. 4 5
148 173.16 wind 7.0 270 < th dose independent rect. 7 10
149 173.17 radiation 40.0 30 < th dose independent rect. 4 5
153 173.22 humidity 50.0 270 > th dose dependent rect. 4 1
154 173.26 temperature 10.0 270 > th dose dependent rect. 4 1
160 173.39 radiation 40.0 270 < th dose dependent rect. 3 4
161 173.41 temperature 15.0 270 > th dose independent rect. 22 14
195 173.84 wind 9.0 270 < th dose dependent rect. 3 4
207 174.00 wind 9.0 270 < th dose dependent rect. 4 1
210 174.05 precipitation 0.1 270 < th dose independent rect. 7 20
211 174.05 precipitation 0.1 270 < th dose dependent rect. 7 20
230 174.27 precipitation 0.1 30 < th dose independent rect. 9 19
231 174.27 precipitation 0.1 30 < th dose dependent rect. 9 19
238 174.34 humidity 50.0 270 > th dose dependent rect. 3 4
280 174.69 temperature 10.0 1440 > th dose independent rect. 5 5
283 174.69 atmosphere 995.0 1440 > th dose independent rect. 5 5
284 174.69 atmosphere 1015.0 1440 < th dose independent rect. 5 5
285 174.69 temperature 10.0 1440 > th dose independent rect. 10 19
297 174.77 temperature 15.0 270 > th dose independent rect. 22 4
300 174.81 humidity 50.0 270 > th dose dependent rect. 22 4
324 174.92 atmosphere 1000.0 270 > th dose independent rect. 21 6
343 175.01 wind 7.0 270 < th dose independent rect. 22 14
352 175.05 precipitation 0.1 270 < th dose independent rect. 2 20
353 175.05 precipitation 0.1 270 < th dose dependent rect. 2 20
361 175.10 wind 9.0 270 < th dose dependent rect. 22 4
369 175.20 atmosphere 1005.0 270 > th dose independent rect. 4 1
410 175.49 wind 9.0 270 < th dose dependent rect. 7 10
451 175.74 humidity 60.0 270 > th dose dependent rect. 23 2
456 175.81 precipitation 0.1 270 < th dose independent rect. 1 22
459 175.81 precipitation 0.1 270 < th dose dependent rect. 1 22
463 175.85 temperature 15.0 270 > th dose independent rect. 23 2
467 175.87 wind 9.0 270 < th dose dependent rect. 23 2
472 175.90 atmosphere 1005.0 90 > th dose independent rect. 4 4
476 175.95 wind 5.0 270 < th dose independent rect. 22 4
498 176.17 radiation 1.0 90 > th dose independent rect. 4 4
508 176.17 atmosphere 1015.0 270 < th dose independent rect. 2 20
512 176.24 humidity 90.0 10 < th dose independent rect. 4 5
543 176.42 radiation 1.0 270 < th dose independent rect. 3 15
552 176.44 temperature 15.0 270 > th dose independent rect. 21 6
556 176.46 temperature 30.0 270 < th dose independent rect. 22 4
557 176.46 humidity 50.0 270 > th dose independent rect. 22 4
561 176.46 radiation 1.0 270 < th dose independent rect. 22 4
566 176.46 temperature 10.0 270 > th dose independent rect. 2 20
568 176.46 radiation 1.0 270 < th dose dependent rect. 22 4
588 176.51 radiation 1.0 270 < th dose independent rect. 3 18
595 176.54 wind 9.0 1440 < th dose independent rect. 5 4
599 176.54 humidity 50.0 1440 > th dose independent rect. 5 4
626 176.65 precipitation 0.1 270 < th dose independent rect. 22 4
627 176.65 precipitation 0.1 270 < th dose dependent rect. 22 4
660 176.79 wind 1.0 270 > th dose independent rect. 3 4
676 177.00 radiation 1.0 270 < th dose dependent rect. 3 18
682 177.04 precipitation 0.1 270 < th dose independent rect. 3 18
683 177.04 precipitation 0.1 270 < th dose dependent rect. 3 18
686 177.07 wind 5.0 270 < th dose independent rect. 23 2
700 177.17 radiation 1.0 270 < th dose independent rect. 3 8
726 177.27 radiation 1.0 270 < th dose dependent rect. 3 15
727 177.29 atmosphere 1015.0 30 < th dose independent rect. 9 19
742 177.33 temperature 30.0 270 < th dose independent rect. 23 2
743 177.33 humidity 50.0 270 > th dose independent rect. 23 2
747 177.33 radiation 1.0 270 < th dose independent rect. 23 2
753 177.33 temperature 10.0 270 > th dose independent rect. 1 22
754 177.33 radiation 1.0 270 < th dose dependent rect. 23 2
760 177.34 radiation 40.0 90 < th dose independent rect. 3 21
761 177.34 precipitation 0.1 270 < th dose independent rect. 5 23
765 177.34 precipitation 0.1 270 < th dose dependent rect. 5 23
773 177.41 atmosphere 995.0 270 > th dose dependent rect. 22 4
777 177.44 precipitation 0.1 270 < th dose independent rect. 23 2
780 177.44 precipitation 0.1 270 < th dose dependent rect. 23 2
791 177.53 atmosphere 995.0 270 > th dose dependent rect. 23 2
859 177.87 wind 7.0 270 < th dose independent rect. 21 6
864 177.91 atmosphere 1015.0 270 < th dose independent rect. 3 18
871 177.93 atmosphere 995.0 30 > th dose dependent rect. 9 19
880 177.96 wind 1.0 30 > th dose independent rect. 4 5
881 177.98 radiation 1.0 270 < th dose independent rect. 2 20
914 178.10 temperature 30.0 270 < th dose dependent rect. 4 1
956 178.20 wind 7.0 270 < th dose independent rect. 17 10
983 178.29 temperature 30.0 270 < th dose independent rect. 21 6
984 178.29 humidity 50.0 270 > th dose independent rect. 21 6
989 178.29 radiation 1.0 270 < th dose independent rect. 21 6
994 178.29 temperature 10.0 270 > th dose independent rect. 3 18
995 178.29 radiation 1.0 270 < th dose dependent rect. 21 6