Os05g0563400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 5.
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Os05g0563400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.95 | 0.332 | 12 | -0.552 | 1.43 | -0.445 | 0.143 | 0.622 | -0.365 | 3.95 | 12.49 | 10 | -- | -- |
| 50.99 | 0.335 | 12 | -0.568 | 1.44 | -0.498 | 0.606 | -- | -0.361 | 3.77 | 12.49 | 10 | -- | -- |
| 49.48 | 0.33 | 12 | -0.559 | 1.42 | -0.45 | -- | 0.656 | -0.362 | 3.93 | 12.49 | 10 | -- | -- |
| 51.99 | 0.338 | 12 | -0.576 | 1.41 | -0.434 | -- | -- | -0.364 | 3.98 | 12.49 | 10 | -- | -- |
| 136.73 | 0.545 | 12 | -0.497 | -- | 0.145 | -- | 0.684 | -0.322 | -- | 30.33 | 7 | -- | -- |
| 55.17 | 0.348 | 12 | -0.569 | 1.27 | -- | 0.199 | -- | -0.355 | 5.25 | -- | -- | -- | -- |
| 55.26 | 0.348 | 12 | -0.569 | 1.28 | -- | -- | -- | -0.355 | 5.28 | -- | -- | -- | -- |
| 71.67 | 0.394 | 12 | -0.473 | -- | 1.41 | -- | -- | -0.213 | -- | 226.8 | 534 | -- | -- |
| 60.59 | 0.363 | 12 | -- | 1.42 | -0.451 | -- | -- | -0.303 | 3.9 | 10 | 5 | -- | -- |
| 140.34 | 0.554 | 12 | -0.524 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 63.78 | 0.374 | 12 | -- | 1.27 | -- | -- | -- | -0.292 | 5.29 | -- | -- | -- | -- |
| 77.55 | 0.41 | 12 | -- | -- | 1.42 | -- | -- | -0.158 | -- | 235.7 | 546 | -- | -- |
| 147.6 | 0.567 | 12 | -- | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.04 | wind | 5.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 2 | 40.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 2 |
| 4 | 40.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 3 |
| 5 | 40.64 | humidity | 80.0 | 90 | > th | dose independent | rect. | 19 | 4 |
| 7 | 40.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 10 | 40.92 | wind | 5.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 11 | 40.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 13 | 41.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 14 | 41.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 4 |
| 19 | 41.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 23 | 41.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 21 |
| 25 | 41.31 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 26 | 41.33 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 19 | 2 |
| 27 | 41.35 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 4 |
| 30 | 41.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 3 |
| 45 | 41.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 46 | 41.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 6 |
| 49 | 41.64 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 51 | 41.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 3 |
| 56 | 41.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 3 |
| 57 | 41.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 60 | 41.79 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 67 | 41.88 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 69 | 41.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 71 | 41.90 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 73 | 41.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 5 |
| 74 | 41.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 86 | 41.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 20 |
| 101 | 42.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 109 | 42.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 117 | 42.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 118 | 42.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 10 |
| 119 | 42.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 10 |
| 120 | 42.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 121 | 42.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 14 |
| 125 | 42.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 10 |
| 127 | 42.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 143 | 42.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 19 |
| 144 | 42.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 145 | 42.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 14 |
| 148 | 42.33 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 154 | 42.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 21 |
| 155 | 42.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 158 | 42.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 167 | 42.47 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 170 | 42.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 182 | 42.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 191 | 42.62 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 19 |
| 206 | 42.72 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 4 |
| 227 | 42.82 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 228 | 42.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 235 | 42.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 244 | 42.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 247 | 42.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 290 | 43.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 300 | 43.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 314 | 43.23 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 4 |
| 326 | 43.29 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 334 | 43.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 363 | 43.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 400 | 43.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 411 | 43.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 420 | 43.71 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 421 | 43.72 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 4 |
| 442 | 43.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 458 | 43.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 462 | 43.90 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 464 | 43.91 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 478 | 43.99 | humidity | 70.0 | 10 | > th | dose independent | rect. | 19 | 5 |
| 504 | 44.10 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 517 | 44.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 519 | 44.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 525 | 44.19 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 546 | 44.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 552 | 44.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 560 | 44.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 567 | 44.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 587 | 44.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 650 | 44.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 672 | 44.54 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 692 | 44.59 | wind | 5.0 | 10 | < th | dose independent | rect. | 19 | 5 |
| 710 | 44.62 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 724 | 44.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 727 | 44.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 731 | 44.67 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 737 | 44.67 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 738 | 44.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 758 | 44.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 769 | 44.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 9 |
| 785 | 44.74 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 812 | 44.78 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 818 | 44.79 | wind | 9.0 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 825 | 44.80 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 826 | 44.80 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 19 | 5 |
| 835 | 44.83 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 15 |
| 855 | 44.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 868 | 44.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 871 | 44.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 15 |
| 874 | 44.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 875 | 44.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 9 |
| 876 | 44.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 9 |
| 877 | 44.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 878 | 44.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 881 | 44.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 9 |
| 883 | 44.98 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 885 | 44.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 9 |
| 952 | 45.08 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 9 |
| 994 | 45.17 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 9 |