Os05g0563300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0563300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.54 | 0.647 | 10.3 | 4.3 | 1.1 | -2.71 | 0.596 | -0.689 | 0.0749 | 22.9 | 19.98 | 4363 | -- | -- |
| 190.17 | 0.642 | 10.3 | 4.24 | 1.1 | -2.55 | 0.584 | -- | 0.0701 | 22.9 | 19.9 | 4389 | -- | -- |
| 190.91 | 0.644 | 10.3 | 4.27 | 1.1 | -2.72 | -- | -0.688 | 0.0705 | 23.1 | 19.9 | 4439 | -- | -- |
| 191.18 | 0.644 | 10.3 | 4.3 | 1.1 | -2.43 | -- | -- | 0.0313 | 23.1 | 20.6 | 4382 | -- | -- |
| 256.5 | 0.746 | 10.3 | 4.46 | -- | -2.38 | -- | -0.215 | 0.0531 | -- | 20.9 | 3716 | -- | -- |
| 303.08 | 0.816 | 10.1 | 5.8 | 1.12 | -- | 0.664 | -- | 0.746 | 23.1 | -- | -- | -- | -- |
| 304.87 | 0.818 | 10.1 | 5.77 | 1.11 | -- | -- | -- | 0.742 | 23.2 | -- | -- | -- | -- |
| 255.76 | 0.745 | 10.3 | 4.39 | -- | -2.36 | -- | -- | 0.0183 | -- | 21.02 | 3746 | -- | -- |
| 235.52 | 0.715 | 10.5 | -- | 1.05 | -4.88 | -- | -- | -1.07 | 23.1 | 18.41 | 47520 | -- | -- |
| 382.37 | 0.914 | 10.1 | 5.79 | -- | -- | -- | -- | 0.752 | -- | -- | -- | -- | -- |
| 1181.39 | 1.61 | 10.3 | -- | 1.17 | -- | -- | -- | 0.1 | 23.6 | -- | -- | -- | -- |
| 304 | 0.812 | 10.5 | -- | -- | -4.92 | -- | -- | -1.07 | -- | 18.41 | 47520 | -- | -- |
| 1268 | 1.66 | 10.3 | -- | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 8 | 183.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 9 | 184.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 11 | 184.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 12 | 184.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 4 |
| 14 | 184.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 16 | 184.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 21 | 184.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 39 | 185.20 | temperature | 20 | 4320 | < th | dose independent | sin | 9 | NA |
| 40 | 185.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 46 | 185.39 | temperature | 20 | 4320 | > th | dose independent | sin | 8 | NA |
| 48 | 185.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 62 | 185.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 82 | 185.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 13 |
| 100 | 186.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 101 | 186.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 15 |
| 111 | 186.03 | wind | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 191 | 186.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 397 | 188.63 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 407 | 188.77 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 417 | 188.88 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 435 | 189.02 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 436 | 189.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 445 | 189.04 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 492 | 189.34 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 541 | 189.69 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 570 | 189.92 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 573 | 189.95 | temperature | 20 | 14400 | < th | dose dependent | sin | 8 | NA |
| 582 | 190.02 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 593 | 190.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 600 | 190.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 641 | 190.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 667 | 190.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 722 | 190.98 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 949 | 192.54 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 966 | 192.79 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 976 | 192.89 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 998 | 193.11 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 23 |