Os05g0561800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0561800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.44 | 0.584 | 4.22 | 0.00428 | 0.983 | -1.89 | 0.984 | -1.48 | 0.319 | 3.37 | 20 | 4896 | -- | -- |
| 156.46 | 0.583 | 4.26 | -0.0338 | 0.976 | -1.48 | 1.03 | -- | 0.331 | 3.46 | 19.9 | 3709 | -- | -- |
| 157.13 | 0.584 | 4.21 | 0.0189 | 0.968 | -1.98 | -- | -1.73 | 0.341 | 3.19 | 19.63 | 4896 | -- | -- |
| 159.92 | 0.589 | 4.28 | -0.146 | 1 | -1.55 | -- | -- | 0.272 | 3.17 | 20.1 | 4826 | -- | -- |
| 208.41 | 0.672 | 4.19 | -0.0185 | -- | -2.21 | -- | -2.29 | 0.337 | -- | 19.64 | 5405 | -- | -- |
| 197.02 | 0.658 | 4.18 | 0.797 | 1 | -- | 0.961 | -- | 0.7 | 3.22 | -- | -- | -- | -- |
| 199.95 | 0.662 | 4.18 | 0.778 | 1.01 | -- | -- | -- | 0.695 | 3.11 | -- | -- | -- | -- |
| 210.11 | 0.675 | 4.28 | -0.18 | -- | -1.66 | -- | -- | 0.291 | -- | 19.9 | 3901 | -- | -- |
| 160.48 | 0.59 | 4.28 | -- | 0.985 | -1.45 | -- | -- | 0.307 | 3.18 | 20 | 4826 | -- | -- |
| 257.59 | 0.75 | 4.18 | 0.821 | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
| 215.9 | 0.687 | 4.2 | -- | 1.02 | -- | -- | -- | 0.608 | 3.11 | -- | -- | -- | -- |
| 210.61 | 0.676 | 4.27 | -- | -- | -1.56 | -- | -- | 0.315 | -- | 19.9 | 3901 | -- | -- |
| 275.35 | 0.775 | 4.2 | -- | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 2 | 152.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 3 | 153.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 4 | 154.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 5 | 154.25 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 7 | 154.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 9 | 154.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 10 | 154.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 32 | 154.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 34 | 154.85 | temperature | 20 | 4320 | < th | dose independent | sin | 8 | NA |
| 48 | 154.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 52 | 154.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 62 | 154.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 8 |
| 76 | 155.03 | temperature | 20 | 4320 | > th | dose independent | sin | 8 | NA |
| 77 | 155.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 13 |
| 118 | 155.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 199 | 155.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 317 | 155.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 319 | 155.57 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 356 | 155.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 417 | 155.82 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 418 | 155.83 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 465 | 156.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 695 | 157.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 731 | 157.91 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 744 | 158.11 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 787 | 158.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 792 | 158.53 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 803 | 158.58 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 805 | 158.59 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 818 | 158.62 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 826 | 158.65 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 832 | 158.66 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 835 | 158.67 | temperature | 20 | 4320 | < th | dose dependent | sin | 13 | NA |
| 883 | 158.83 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 925 | 158.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 935 | 158.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 957 | 159.02 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 969 | 159.07 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 973 | 159.08 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |