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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0561400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0425) R2 : 0.223
β1 : -1.21 (0.155) R2dD : 0.107 R2D : 0.0993
β2 : 0.906 (0.108) R2dC : 0.121 R2C : 0.118
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.125 (0.0905) R2dN8 : 0.00437 R2N8 : -0.00523
σ : 0.798
deviance : 290.09
__
_____
C
peak time of C : 8.07
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.83 0.744 3.23 -1.2 1.2 0.637 -3.4 -1.99 -0.152 9.6 19.93 10 -- --
263.43 0.756 3.21 -0.973 1.18 0.551 -2.47 -- -0.141 9.19 18.97 9 -- --
275.67 0.773 3.24 -1.15 1.27 0.666 -- -0.991 -0.218 9.13 20.04 9 -- --
272.97 0.769 3.25 -1.19 1.21 0.633 -- -- -0.138 9.21 20.02 9 -- --
331.62 0.853 3.26 -1.23 -- 0.185 -- -0.603 -0.115 -- 27.83 11 -- --
275.45 0.778 3.24 -1.15 0.903 -- -2.2 -- -0.127 8.09 -- -- -- --
290.09 0.798 3.24 -1.21 0.906 -- -- -- -0.125 8.07 -- -- -- --
332.83 0.853 3.26 -1.2 -- 0.196 -- -- -0.112 -- 27.57 8 -- --
306.33 0.815 3.24 -- 1.22 0.708 -- -- -0.0441 9.61 20.1 7 -- --
335.08 0.855 3.26 -1.2 -- -- -- -- -0.114 -- -- -- -- --
328.67 0.848 3.21 -- 0.899 -- -- -- 0.00954 8.16 -- -- -- --
370.52 0.899 3.23 -- -- 0.212 -- -- 0.0204 -- 27.57 8 -- --
373.16 0.902 3.23 -- -- -- -- -- 0.0193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.92 radiation 20 90 < th dose independent rect. 13 22
2 243.55 radiation 20 90 < th dose independent rect. 15 20
3 243.67 temperature 20 270 > th dose independent rect. 5 1
6 244.70 temperature 20 270 > th dose independent rect. 4 3
9 245.41 temperature 20 270 > th dose independent rect. 2 6
10 245.44 radiation 30 10 < th dose independent rect. 4 6
15 245.79 radiation 30 10 < th dose independent rect. 12 22
17 246.32 radiation 20 270 < th dose independent rect. 1 9
22 247.22 radiation 20 90 < th dose independent rect. 4 7
23 247.36 radiation 40 90 < th dose dependent rect. 13 22
24 247.50 radiation 20 90 < th dose independent rect. 17 17
26 248.01 radiation 30 90 < th dose dependent rect. 15 19
27 248.04 radiation 40 270 < th dose dependent rect. 1 9
30 248.10 radiation 20 10 < th dose independent rect. 4 19
38 248.32 radiation 20 10 < th dose independent rect. 15 20
45 248.45 radiation 20 10 < th dose independent rect. 17 17
48 248.55 atmosphere 1005 90 > th dose independent rect. 9 6
49 248.61 radiation 40 10 < th dose dependent rect. 12 22
56 248.79 atmosphere 1005 270 > th dose independent rect. 9 1
62 248.97 radiation 40 10 < th dose dependent rect. 4 6
65 249.03 temperature 15 270 > th dose dependent rect. 1 7
87 249.88 radiation 20 90 < th dose independent rect. 4 17
107 250.35 atmosphere 1005 270 > th dose independent rect. 7 7
109 250.37 radiation 30 10 < th dose independent rect. 2 8
132 250.96 humidity 70 10 > th dose independent rect. 4 6
135 251.04 temperature 20 270 > th dose dependent rect. 4 4
148 251.20 radiation 20 10 < th dose independent sin 2 NA
151 251.26 humidity 70 90 > th dose independent rect. 15 18
153 251.31 humidity 70 90 > th dose independent rect. 17 16
155 251.38 radiation 20 10 < th dose independent rect. 17 23
156 251.39 radiation 20 10 < th dose independent rect. 15 23
157 251.40 temperature 20 10 > th dose dependent rect. 1 9
167 251.50 radiation 20 10 > th dose independent sin 4 NA
170 251.53 humidity 70 10 > th dose independent rect. 14 20
173 251.58 temperature 15 270 > th dose dependent rect. 5 1
176 251.61 radiation 40 270 < th dose dependent sin 6 NA
182 251.66 radiation 40 90 < th dose dependent rect. 4 7
197 251.76 radiation 30 10 < th dose dependent rect. 5 18
207 251.82 temperature 20 10 > th dose dependent rect. 17 17
221 251.87 radiation 40 10 < th dose dependent rect. 17 17
223 251.90 radiation 20 10 < th dose independent no NA NA
224 251.90 radiation 20 10 > th dose independent rect. 7 9
245 251.93 radiation 20 10 > th dose independent no NA NA
375 252.08 radiation 20 10 < th dose independent rect. 7 15
400 252.22 radiation 20 10 > th dose independent rect. 9 23
401 252.22 radiation 40 90 < th dose dependent rect. 4 17
404 252.25 radiation 20 270 < th dose independent sin 9 NA
439 252.60 radiation 20 10 < th dose independent rect. 24 23
443 252.61 radiation 20 10 < th dose independent rect. 2 21
463 252.70 radiation 1 270 > th dose dependent sin 7 NA
475 252.76 radiation 20 10 < th dose independent rect. 4 23
483 252.84 humidity 70 10 > th dose independent rect. 4 17
495 252.99 humidity 70 10 > th dose independent rect. 4 19
512 253.10 atmosphere 995 90 > th dose dependent rect. 9 8
545 253.33 radiation 20 10 > th dose independent rect. 14 23
550 253.39 radiation 40 270 < th dose dependent rect. 2 16
580 253.47 radiation 30 10 < th dose dependent sin 0 NA
588 253.53 radiation 20 90 > th dose independent rect. 14 23
600 253.61 radiation 30 10 < th dose independent rect. 24 10
609 253.67 radiation 20 90 < th dose independent rect. 24 23
612 253.68 radiation 20 270 > th dose independent sin 9 NA
615 253.69 humidity 70 10 > th dose independent rect. 17 17
638 253.82 radiation 20 90 < th dose independent sin 2 NA
661 253.92 radiation 20 90 < th dose independent no NA NA
731 254.21 atmosphere 995 270 > th dose dependent rect. 6 9
732 254.21 radiation 10 270 > th dose dependent rect. 17 17
741 254.24 radiation 10 270 > th dose dependent rect. 6 4
753 254.24 radiation 30 10 < th dose dependent rect. 7 15
789 254.37 radiation 30 270 > th dose dependent rect. 9 1
797 254.41 radiation 10 10 < th dose independent rect. 7 4
812 254.46 radiation 20 90 < th dose independent rect. 7 14
819 254.50 humidity 60 90 > th dose dependent rect. 4 7
829 254.54 radiation 40 270 > th dose independent rect. 9 1
845 254.59 radiation 30 10 < th dose dependent rect. 15 23
847 254.60 radiation 1 270 > th dose dependent rect. 9 1
857 254.64 humidity 80 270 > th dose independent rect. 1 9
886 254.75 radiation 20 270 > th dose independent rect. 6 5
907 254.77 humidity 80 14400 > th dose dependent rect. 22 6
916 254.82 wind 3 720 > th dose dependent rect. 2 7
925 254.85 radiation 40 270 > th dose independent rect. 14 20
944 254.91 radiation 20 90 > th dose independent sin 3 NA
957 254.92 radiation 20 90 > th dose independent no NA NA
958 254.92 radiation 20 90 > th dose independent rect. 6 11