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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0561200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0462) R2 : 0.0929
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.75 (0.422) R2dE : 0.0849 R2E : 0.0841
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.18 (0.0972) R2dN8 : 0.00875 R2N8 : 0.00793
σ : 0.867
deviance : 346.82
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.68
memory length : 105
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.91
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
336.32 0.862 2.95 -0.15 0.294 3.61 -0.317 -9.41 -0.17 1.68 9.056 93 7.12 0.193
342.19 0.862 2.99 -0.158 0.29 2.79 -0.176 -- -0.262 0.569 4.831 109 5.91 0.896
335.69 0.853 2.95 -0.155 0.3 3.73 -- -9.37 -0.179 1.39 8.661 92 7.16 0.144
341.9 0.861 2.97 -0.0908 0.265 2.78 -- -- -0.204 0.404 4.79 109 5.91 0.932
340.38 0.859 2.95 -0.124 -- 4.18 -- -11.1 -0.17 -- 6.93 97 7.13 0.167
372.07 0.904 2.95 -0.164 0.316 -- -0.636 -- -0.222 3.55 -- -- -- --
373.16 0.905 2.95 -0.153 0.312 -- -- -- -0.218 2.92 -- -- -- --
346.75 0.867 2.96 -0.0777 -- 2.73 -- -- -0.223 -- 4.759 105 5.9 1.02
342 0.861 2.96 -- 0.292 2.86 -- -- -0.198 0.339 4.73 109 5.9 0.917
378.76 0.909 2.95 -0.14 -- -- -- -- -0.21 -- -- -- -- --
373.78 0.904 2.95 -- 0.309 -- -- -- -0.201 2.91 -- -- -- --
346.82 0.867 2.94 -- -- 2.75 -- -- -0.18 -- 4.68 105 5.91 1.02
379.27 0.909 2.95 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.88 radiation 10.0 90 < th dose dependent rect. 7 1
3 345.84 radiation 10.0 30 < th dose independent rect. 7 1
11 347.13 wind 1.0 10 > th dose dependent rect. 3 5
13 347.35 humidity 90.0 10 > th dose dependent rect. 6 2
27 349.40 humidity 80.0 10 > th dose dependent rect. 8 1
57 350.99 wind 3.0 90 > th dose dependent rect. 4 1
90 353.07 wind 7.0 30 > th dose dependent rect. 4 4
102 353.40 wind 3.0 90 > th dose independent rect. 4 1
104 353.45 precipitation 0.1 90 > th dose independent rect. 13 1
107 353.45 precipitation 0.1 90 > th dose dependent rect. 13 1
112 353.68 humidity 80.0 10 > th dose independent rect. 8 1
114 353.73 radiation 10.0 10 < th dose dependent rect. 14 1
117 353.89 temperature 20.0 30 < th dose dependent rect. 6 2
121 353.92 humidity 90.0 90 > th dose independent rect. 5 3
122 353.93 radiation 10.0 10 < th dose independent rect. 14 1
146 354.39 wind 7.0 30 > th dose independent rect. 3 5
154 354.53 humidity 90.0 10 > th dose independent rect. 6 2
159 354.56 radiation 20.0 90 < th dose dependent rect. 17 15
167 354.62 atmosphere 1010.0 90 < th dose dependent rect. 5 3
174 354.92 atmosphere 1010.0 10 < th dose dependent rect. 5 4
195 355.31 atmosphere 995.0 1440 > th dose independent rect. 9 18
207 355.49 atmosphere 1005.0 90 < th dose independent rect. 5 3
225 355.64 atmosphere 1005.0 10 < th dose independent rect. 5 4
226 355.66 temperature 30.0 30 > th dose dependent rect. 17 1
259 355.96 atmosphere 1005.0 270 < th dose independent rect. 4 1
297 356.32 temperature 30.0 10 > th dose independent rect. 17 1
357 356.84 radiation 10.0 90 > th dose dependent rect. 17 1
384 356.97 wind 1.0 90 > th dose independent rect. 2 6
386 356.98 temperature 20.0 90 < th dose independent rect. 5 3
442 357.35 atmosphere 995.0 1440 > th dose independent rect. 9 21
467 357.44 wind 3.0 10 > th dose dependent rect. 7 1
470 357.46 radiation 10.0 90 > th dose independent rect. 17 1
485 357.48 radiation 10.0 90 < th dose independent rect. 17 15
492 357.53 atmosphere 995.0 1440 > th dose independent rect. 12 15
493 357.53 atmosphere 995.0 1440 > th dose independent rect. 22 19
572 357.94 humidity 80.0 10 > th dose independent rect. 2 7
573 357.94 temperature 25.0 10 < th dose dependent rect. 13 1
582 357.99 atmosphere 995.0 1440 > th dose independent rect. 9 8
583 357.99 atmosphere 995.0 1440 > th dose independent rect. 22 21
604 358.15 wind 1.0 10 > th dose independent rect. 2 19
633 358.28 wind 1.0 90 > th dose independent rect. 2 18
644 358.35 radiation 20.0 90 < th dose dependent rect. 2 6
650 358.41 atmosphere 995.0 90 > th dose independent rect. 1 23
666 358.53 wind 3.0 270 > th dose independent rect. 21 2
671 358.55 humidity 90.0 30 < th dose dependent rect. 18 3
679 358.60 atmosphere 995.0 10 > th dose independent sin 8 NA
683 358.64 temperature 20.0 90 < th dose independent rect. 3 5
694 358.71 atmosphere 995.0 1440 > th dose independent rect. 9 23
715 358.79 radiation 10.0 90 < th dose independent rect. 2 6
719 358.80 humidity 70.0 30 > th dose dependent rect. 2 7
742 358.96 humidity 70.0 10 < th dose independent rect. 18 1
743 358.96 humidity 80.0 90 < th dose independent rect. 18 2
749 358.99 atmosphere 1000.0 10 < th dose independent rect. 17 1
756 358.99 atmosphere 1000.0 10 < th dose dependent rect. 17 1
787 359.04 wind 1.0 90 > th dose independent rect. 16 16
831 359.17 wind 1.0 10 < th dose dependent rect. 1 2
874 359.37 temperature 30.0 270 < th dose independent rect. 6 9
884 359.41 temperature 30.0 30 < th dose independent rect. 8 18
890 359.43 temperature 30.0 30 < th dose dependent rect. 2 7
898 359.46 atmosphere 995.0 10 < th dose independent sin 8 NA
905 359.48 atmosphere 995.0 30 < th dose dependent sin 8 NA