Os05g0560500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0560500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.22 | 0.837 | 8.49 | -2.16 | 1.48 | -0.914 | 0.326 | -5.69 | 0.245 | 0.881 | 20.51 | 1736 | -- | -- |
| 366.77 | 0.892 | 8.27 | -0.996 | 1.57 | -0.554 | 0.402 | -- | 0.671 | 1.08 | 23.8 | 1107 | -- | -- |
| 317.67 | 0.83 | 8.49 | -2.18 | 1.48 | -0.91 | -- | -5.68 | 0.243 | 0.867 | 20.51 | 1736 | -- | -- |
| 361.09 | 0.885 | 8.3 | -1.12 | 1.26 | -0.612 | -- | -- | 0.564 | 0.365 | 28.2 | 76 | -- | -- |
| 452.83 | 0.991 | 8.47 | -2.21 | -- | -0.811 | -- | -5.5 | 0.257 | -- | 20.8 | 1689 | -- | -- |
| 380.38 | 0.914 | 8.33 | -1.18 | 1.47 | -- | 0.326 | -- | 0.432 | 0.988 | -- | -- | -- | -- |
| 380.82 | 0.914 | 8.33 | -1.19 | 1.47 | -- | -- | -- | 0.431 | 0.967 | -- | -- | -- | -- |
| 413.37 | 0.951 | 8.24 | -0.854 | -- | -1.03 | -- | -- | 0.739 | -- | 26.5 | 31 | -- | -- |
| 386.89 | 0.916 | 8.28 | -- | 1.08 | -0.727 | -- | -- | 0.646 | 24 | 28.3 | 75 | -- | -- |
| 514.68 | 1.06 | 8.3 | -1.14 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 418.22 | 0.957 | 8.3 | -- | 1.45 | -- | -- | -- | 0.563 | 0.931 | -- | -- | -- | -- |
| 428.04 | 0.964 | 8.25 | -- | -- | -1.09 | -- | -- | 0.908 | -- | 26.3 | 11 | -- | -- |
| 548.75 | 1.09 | 8.28 | -- | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 2 | 315.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 4 | 316.01 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 17 |
| 5 | 316.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 6 | 316.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 10 | 316.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 14 | 317.14 | temperature | 20 | 1440 | > th | dose independent | sin | 18 | NA |
| 24 | 317.41 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 15 |
| 36 | 317.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 48 | 317.97 | temperature | 20 | 1440 | < th | dose independent | sin | 17 | NA |
| 51 | 318.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 54 | 318.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 67 | 318.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 79 | 318.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 81 | 318.63 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 118 | 319.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 155 | 319.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 188 | 319.86 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 211 | 320.11 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
| 339 | 321.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 451 | 321.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 506 | 322.22 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 518 | 322.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 534 | 322.34 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 538 | 322.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 565 | 322.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 580 | 322.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 596 | 322.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 597 | 322.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 665 | 323.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 683 | 323.15 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 712 | 323.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 919 | 324.74 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 933 | 324.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 9 |