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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0560100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pollen-specific kinase partner protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0399) R2 : 0.605
β1 : -1.83 (0.156) R2dD : 0.146 R2D : 0.215
β2 : 1.11 (0.0988) R2dC : 0.112 R2C : 0.146
β3 : 2.33 (0.236) R2dE : 0.108 R2E : 0.253
β4 : -3.58 (0.404) R2dD*C : 0.0694 R2D*C : 0.0869
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.423 (0.0887) R2dN8 : 0.0294 R2N8 : 0.0279
σ : 0.736
deviance : 249.7
__
_____
C
peak time of C : 15
E
wheather : temperature
threshold : 21.5
memory length : 931
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.51 0.738 3.54 -1.68 1.13 1.87 -3.37 -1.83 -0.383 15 21.9 914 -- --
249.7 0.736 3.57 -1.83 1.11 2.33 -3.58 -- -0.423 15 21.5 931 -- --
282.05 0.782 3.54 -1.59 1.1 1.88 -- -3.02 -0.373 15.1 22.1 957 -- --
292.22 0.796 3.58 -1.87 1.11 2.49 -- -- -0.419 15.4 21.5 945 -- --
350.98 0.873 3.51 -1.52 -- 2.08 -- -2.96 -0.319 -- 22.4 969 -- --
301.96 0.815 3.63 -2.41 1.24 -- -3.83 -- -0.701 14.7 -- -- -- --
353.08 0.88 3.65 -2.51 1.24 -- -- -- -0.723 14.9 -- -- -- --
358.88 0.882 3.57 -1.81 -- 2.92 -- -- -0.405 -- 21.4 974 -- --
349.47 0.871 3.49 -- 1.09 3.29 -- -- -0.0539 15.2 20.73 2482 -- --
442.16 0.983 3.65 -2.56 -- -- -- -- -0.755 -- -- -- -- --
518.51 1.07 3.58 -- 1.29 -- -- -- -0.444 14.9 -- -- -- --
417.15 0.951 3.49 -- -- 3.53 -- -- -0.0523 -- 20.7 2485 -- --
614.8 1.16 3.59 -- -- -- -- -- -0.471 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.47 temperature 30 270 < th dose dependent rect. 22 18
2 244.93 temperature 15 270 > th dose dependent rect. 3 9
10 246.08 temperature 30 720 < th dose dependent rect. 4 10
11 246.18 temperature 30 720 < th dose dependent sin 4 NA
12 246.19 temperature 30 720 < th dose dependent rect. 3 12
13 246.23 temperature 25 720 < th dose dependent rect. 3 14
41 247.32 temperature 15 270 > th dose dependent rect. 16 21
54 247.78 temperature 10 720 > th dose dependent rect. 23 14
57 247.84 temperature 10 270 > th dose dependent rect. 6 15
69 248.08 temperature 30 720 < th dose dependent rect. 4 6
122 249.41 temperature 20 720 < th dose independent rect. 4 1
143 249.84 temperature 15 720 > th dose dependent sin 5 NA
203 250.66 temperature 15 10 > th dose dependent rect. 7 17
216 250.86 humidity 90 43200 < th dose dependent rect. 6 2
228 251.03 temperature 20 4320 < th dose independent rect. 19 2
253 251.33 humidity 60 43200 > th dose dependent rect. 6 2
272 251.48 temperature 20 720 > th dose independent rect. 1 18
274 251.53 humidity 60 43200 > th dose dependent rect. 5 4
285 251.74 temperature 20 720 < th dose independent rect. 4 3
287 251.74 temperature 10 720 > th dose dependent rect. 1 18
295 251.92 temperature 30 10 < th dose dependent rect. 22 20
296 251.93 temperature 25 720 < th dose independent rect. 5 8
298 251.93 temperature 20 720 < th dose dependent rect. 8 22
320 252.13 humidity 90 43200 < th dose dependent rect. 18 2
325 252.14 temperature 20 4320 > th dose independent rect. 19 2
336 252.22 temperature 20 720 > th dose independent rect. 16 21
337 252.24 humidity 50 43200 > th dose dependent rect. 19 1
356 252.43 temperature 10 10 > th dose dependent sin 3 NA
357 252.44 temperature 10 720 > th dose dependent rect. 18 19
362 252.48 temperature 20 720 < th dose dependent rect. 3 23
367 252.52 humidity 90 43200 < th dose dependent rect. 5 4
380 252.58 temperature 20 720 < th dose dependent no NA NA
391 252.63 temperature 20 720 > th dose independent rect. 18 19
394 252.65 temperature 25 720 < th dose independent rect. 4 10
401 252.67 temperature 15 10 > th dose dependent rect. 18 21
403 252.68 temperature 20 720 < th dose dependent rect. 11 23
417 252.74 humidity 60 43200 > th dose dependent rect. 4 6
445 252.87 temperature 20 720 > th dose independent rect. 1 12
462 252.94 temperature 20 720 > th dose independent rect. 1 14
493 253.08 temperature 30 10 < th dose dependent sin 3 NA
511 253.15 temperature 20 720 > th dose independent sin 5 NA
521 253.20 temperature 30 90 < th dose dependent sin 4 NA
527 253.23 temperature 10 720 > th dose dependent rect. 7 6
553 253.38 humidity 90 43200 < th dose dependent rect. 16 6
557 253.40 temperature 20 10 > th dose dependent rect. 7 8
576 253.48 temperature 25 1440 < th dose dependent rect. 8 5
588 253.53 temperature 25 1440 < th dose dependent rect. 9 2
598 253.58 temperature 30 10 < th dose dependent rect. 4 14
607 253.61 temperature 20 4320 < th dose dependent rect. 21 1
615 253.64 temperature 20 720 > th dose independent rect. 23 16
617 253.64 temperature 15 90 > th dose dependent rect. 18 19
664 253.85 temperature 20 720 < th dose independent rect. 1 19
684 253.95 temperature 20 720 > th dose independent rect. 18 17
700 254.01 temperature 10 720 > th dose dependent rect. 18 17
717 254.09 temperature 20 4320 < th dose dependent rect. 4 1
729 254.13 humidity 60 43200 < th dose dependent rect. 16 16
741 254.16 temperature 30 10 < th dose dependent rect. 6 12
742 254.16 temperature 20 720 < th dose dependent rect. 15 16
756 254.21 temperature 20 720 < th dose independent rect. 18 20
771 254.27 atmosphere 1005 4320 > th dose dependent rect. 19 1
781 254.30 temperature 20 10 > th dose dependent rect. 5 10
788 254.32 temperature 20 10 > th dose dependent rect. 7 6
791 254.33 humidity 60 43200 < th dose dependent rect. 16 1
793 254.34 temperature 20 720 < th dose independent sin 5 NA
812 254.40 humidity 60 43200 < th dose dependent rect. 16 19
826 254.44 temperature 20 720 < th dose independent rect. 2 13
828 254.44 humidity 50 43200 > th dose dependent rect. 17 5
842 254.49 humidity 60 43200 < th dose dependent rect. 16 4
867 254.57 temperature 20 720 < th dose dependent sin 12 NA
886 254.64 temperature 30 10 < th dose dependent rect. 20 22
921 254.76 temperature 10 4320 > th dose dependent rect. 4 2
951 254.85 temperature 25 1440 < th dose dependent rect. 7 13
966 254.89 temperature 25 720 > th dose independent rect. 5 8
991 254.95 temperature 20 720 < th dose independent rect. 23 17