Os05g0558900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Frsb-prov protein.
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Os05g0558900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Frsb-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.88 | 0.248 | 12 | 0.469 | 0.785 | 0.656 | 0.113 | -0.14 | 0.266 | 18.5 | 20.51 | 1276 | -- | -- |
| 27.92 | 0.246 | 12 | 0.498 | 0.783 | 0.656 | 0.106 | -- | 0.274 | 18.4 | 20.5 | 1233 | -- | -- |
| 27.91 | 0.246 | 12 | 0.465 | 0.785 | 0.658 | -- | -0.143 | 0.266 | 18.5 | 20.56 | 1276 | -- | -- |
| 27.95 | 0.246 | 12 | 0.497 | 0.782 | 0.666 | -- | -- | 0.275 | 18.4 | 20.54 | 1233 | -- | -- |
| 54.49 | 0.344 | 11.9 | 0.51 | -- | 0.683 | -- | -0.135 | 0.266 | -- | 20.52 | 513 | -- | -- |
| 38.47 | 0.291 | 11.9 | 0.775 | 0.773 | -- | 0.261 | -- | 0.424 | 18.7 | -- | -- | -- | -- |
| 38.64 | 0.291 | 11.9 | 0.771 | 0.774 | -- | -- | -- | 0.425 | 18.7 | -- | -- | -- | -- |
| 45.05 | 0.313 | 12 | 0.704 | -- | 0.534 | -- | -- | 0.274 | -- | 25.7 | 372 | -- | -- |
| 31.86 | 0.263 | 12 | -- | 0.781 | 0.978 | -- | -- | 0.176 | 18.6 | 19.5 | 2776 | -- | -- |
| 69.89 | 0.391 | 11.9 | 0.753 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 54.29 | 0.345 | 11.9 | -- | 0.764 | -- | -- | -- | 0.339 | 18.7 | -- | -- | -- | -- |
| 52.4 | 0.337 | 12 | -- | -- | 0.697 | -- | -- | 0.131 | -- | 25.82 | 385 | -- | -- |
| 84.83 | 0.43 | 11.9 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 26.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 4 | 26.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 6 | 26.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 7 | 26.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 9 | 26.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 15 | 26.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 34 | 27.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 37 | 27.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 50 | 27.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 73 | 27.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 84 | 27.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 85 | 27.26 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 112 | 27.33 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 160 | 27.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 168 | 27.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 182 | 27.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 232 | 27.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 294 | 27.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 326 | 28.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 365 | 28.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 378 | 28.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 381 | 28.15 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 407 | 28.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 416 | 28.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 476 | 28.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 486 | 28.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 535 | 28.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 28.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 567 | 28.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 581 | 28.55 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 593 | 28.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 602 | 28.57 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 621 | 28.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 741 | 28.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 771 | 28.76 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 850 | 28.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 874 | 28.85 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 897 | 28.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 1000 | 28.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |