Os05g0557200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os05g0557200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.47 | 0.389 | 10.9 | -1.19 | 0.674 | -0.915 | 0.698 | 0.825 | 0.0797 | 18.8 | 2.85 | 84 | -- | -- |
| 71.71 | 0.394 | 10.9 | -1.2 | 0.709 | -1 | 0.63 | -- | 0.0964 | 18.1 | 2.65 | 95 | -- | -- |
| 69.19 | 0.387 | 10.9 | -1.18 | 0.696 | -0.944 | -- | 0.809 | 0.0845 | 18.6 | 2.85 | 95 | -- | -- |
| 72.5 | 0.397 | 10.9 | -1.18 | 0.729 | -0.962 | -- | -- | 0.0795 | 18.5 | 2.7 | 97 | -- | -- |
| 91.17 | 0.447 | 10.9 | -1.21 | -- | -0.934 | -- | 0.661 | 0.0705 | -- | 2.85 | 95 | -- | -- |
| 85.05 | 0.432 | 10.9 | -1.23 | 1.31 | -- | -0.583 | -- | 0.00597 | 22.4 | -- | -- | -- | -- |
| 86.42 | 0.435 | 10.9 | -1.2 | 1.31 | -- | -- | -- | 0.00797 | 22.4 | -- | -- | -- | -- |
| 93.34 | 0.452 | 10.8 | -1.21 | -- | -0.933 | -- | -- | 0.0664 | -- | 2.503 | 75 | -- | -- |
| 108.5 | 0.485 | 10.8 | -- | 0.941 | -1.13 | -- | -- | 0.205 | 17.7 | 2.48 | 147 | -- | -- |
| 191.32 | 0.646 | 10.9 | -1.18 | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
| 124.53 | 0.522 | 10.9 | -- | 1.3 | -- | -- | -- | 0.142 | 22.3 | -- | -- | -- | -- |
| 126.9 | 0.525 | 10.8 | -- | -- | -0.961 | -- | -- | 0.14 | -- | 0.8 | 38 | -- | -- |
| 228.12 | 0.705 | 10.8 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.57 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 67.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 7 | 68.63 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 10 | 68.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 21 | 69.38 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 41 | 69.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 44 | 69.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 47 | 69.79 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 55 | 69.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 59 | 70.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 94 | 70.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 114 | 70.38 | humidity | 60 | 30 | > th | dose dependent | rect. | 9 | 11 |
| 123 | 70.43 | humidity | 50 | 10 | > th | dose dependent | sin | 20 | NA |
| 141 | 70.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 142 | 70.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 152 | 70.58 | humidity | 50 | 10 | > th | dose dependent | no | NA | NA |
| 166 | 70.62 | radiation | 10 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 201 | 70.71 | humidity | 90 | 10 | < th | dose dependent | sin | 21 | NA |
| 206 | 70.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 208 | 70.73 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 233 | 70.77 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 243 | 70.78 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 244 | 70.79 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 275 | 70.89 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 305 | 70.98 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 347 | 71.09 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 23 |
| 348 | 71.10 | temperature | 15 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 375 | 71.15 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 376 | 71.16 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 388 | 71.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 390 | 71.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 393 | 71.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 407 | 71.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 409 | 71.23 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 427 | 71.26 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 428 | 71.27 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 429 | 71.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 431 | 71.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 449 | 71.29 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 454 | 71.31 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 460 | 71.31 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 463 | 71.32 | humidity | 50 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 484 | 71.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 487 | 71.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 516 | 71.38 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 533 | 71.41 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 14 |
| 580 | 71.46 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 640 | 71.48 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 642 | 71.48 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 23 |
| 643 | 71.48 | temperature | 25 | 1440 | > th | dose dependent | sin | 6 | NA |
| 670 | 71.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 681 | 71.50 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 684 | 71.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 693 | 71.51 | humidity | 90 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 694 | 71.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 701 | 71.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 706 | 71.54 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 725 | 71.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 733 | 71.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 736 | 71.58 | temperature | 25 | 14400 | < th | dose dependent | sin | 18 | NA |
| 737 | 71.58 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 779 | 71.61 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 780 | 71.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 836 | 71.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 859 | 71.68 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 905 | 71.70 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 926 | 71.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 931 | 71.73 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 984 | 71.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 985 | 71.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 11 |