Os05g0557100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os05g0557100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 541.69 | 1.09 | 8 | -5.84 | 1.96 | -3.22 | -0.173 | -4.35 | -0.472 | 6.77 | 39.85 | 4487 | 14 | 0.766 |
| 526.47 | 1.07 | 8.02 | -5.62 | 2.06 | -2.41 | -0.345 | -- | -0.447 | 6.85 | 38.31 | 4441 | 14 | 0.374 |
| 513.42 | 1.06 | 8.01 | -5.72 | 2.01 | -2.96 | -- | -2.95 | -0.413 | 6.96 | 39.71 | 4490 | 14 | 0.334 |
| 515.97 | 1.06 | 8.02 | -5.54 | 1.88 | -2.48 | -- | -- | -0.0598 | 6.8 | 36.96 | 4487 | 14 | 0.349 |
| 700.95 | 1.23 | 8.05 | -5.86 | -- | -2.84 | -- | -2.94 | -0.296 | -- | 38.27 | 4550 | 14 | 0.333 |
| 664.82 | 1.21 | 8.08 | -4.89 | 1.98 | -- | -0.333 | -- | -0.466 | 6.93 | -- | -- | -- | -- |
| 665.09 | 1.21 | 8.08 | -4.9 | 1.98 | -- | -- | -- | -0.466 | 6.9 | -- | -- | -- | -- |
| 692.22 | 1.23 | 8.02 | -5.43 | -- | -2.32 | -- | -- | -0.0128 | -- | 35.36 | 4798 | 14 | 0.365 |
| 1166.52 | 1.59 | 7.88 | -- | 1.98 | -1.84 | -- | -- | 0.541 | 6.56 | 35.69 | 2559 | 13.3 | 0.0166 |
| 869.77 | 1.38 | 8.12 | -4.86 | -- | -- | -- | -- | -0.428 | -- | -- | -- | -- | -- |
| 1297.95 | 1.69 | 7.96 | -- | 1.92 | -- | -- | -- | 0.08 | 7.06 | -- | -- | -- | -- |
| 1217.68 | 1.63 | 8.03 | -- | -- | -1.97 | -- | -- | 0.16 | -- | 9.887 | 780 | 13.7 | 0.304 |
| 1492.4 | 1.8 | 8 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 513.89 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 2 | 515.19 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 4 | 520.75 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 5 | 520.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 6 | 520.78 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 8 | 520.81 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 10 | 520.84 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 18 | 521.50 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 32 | 521.52 | temperature | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 63 | 522.01 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 77 | 522.15 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 147 | 525.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 196 | 527.28 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 210 | 527.83 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 265 | 528.66 | temperature | 30 | 43200 | > th | dose independent | sin | 8 | NA |
| 267 | 528.71 | temperature | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 287 | 529.04 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 288 | 529.10 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 332 | 530.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 333 | 530.08 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 349 | 530.53 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 356 | 530.76 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 429 | 531.16 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 468 | 531.34 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 477 | 531.41 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 480 | 531.42 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 485 | 531.45 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 514 | 531.87 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 585 | 532.72 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 586 | 532.72 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 602 | 532.85 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 608 | 532.95 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 628 | 533.03 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 650 | 533.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 797 | 533.85 | wind | 5 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 803 | 533.88 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 921 | 534.56 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 23 |