Os05g0555900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0555900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.43 | 0.555 | 11.4 | 0.853 | 0.724 | 1.07 | 1.08 | 1.87 | 0.0688 | 17.4 | 19 | 95 | -- | -- |
| 142.84 | 0.561 | 11.4 | 0.852 | 0.774 | 0.819 | 1.24 | -- | 0.121 | 17.2 | 10.29 | 92 | -- | -- |
| 141.63 | 0.554 | 11.4 | 0.838 | 0.718 | 1.03 | -- | 2.21 | 0.0641 | 17 | 20.03 | 114 | -- | -- |
| 146.6 | 0.568 | 11.4 | 0.853 | 0.783 | 0.792 | -- | -- | 0.128 | 17 | 9.52 | 81 | -- | -- |
| 161.15 | 0.591 | 11.4 | 0.782 | -- | 1.11 | -- | 1.69 | 0.0706 | -- | 4.237 | 176 | -- | -- |
| 154.5 | 0.583 | 11.4 | 0.86 | 0.956 | -- | 0.981 | -- | 0.117 | 15.8 | -- | -- | -- | -- |
| 157.28 | 0.587 | 11.4 | 0.874 | 0.959 | -- | -- | -- | 0.122 | 15.7 | -- | -- | -- | -- |
| 163.7 | 0.596 | 11.4 | 0.82 | -- | 1.11 | -- | -- | 0.0353 | -- | -0.5188 | 275 | -- | -- |
| 165.78 | 0.603 | 11.4 | -- | 0.764 | 0.826 | -- | -- | 0.0328 | 17.1 | 9.52 | 81 | -- | -- |
| 208.21 | 0.674 | 11.4 | 0.834 | -- | -- | -- | -- | 0.0966 | -- | -- | -- | -- | -- |
| 177.41 | 0.623 | 11.4 | -- | 0.942 | -- | -- | -- | 0.0248 | 15.7 | -- | -- | -- | -- |
| 181.44 | 0.627 | 11.5 | -- | -- | 1.12 | -- | -- | -0.056 | -- | -3.269 | 276 | -- | -- |
| 226.56 | 0.703 | 11.4 | -- | -- | -- | -- | -- | 0.00403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 126.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 4 | 126.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 22 | 128.98 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 26 | 129.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 27 | 129.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 43 | 129.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 55 | 130.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 71 | 130.35 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 82 | 130.49 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 127 | 131.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 175 | 132.10 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 187 | 132.25 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 246 | 132.93 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 265 | 133.08 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 281 | 133.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 364 | 133.81 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 418 | 134.23 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 491 | 134.54 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 498 | 134.60 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 501 | 134.62 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 1 |
| 509 | 134.68 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 539 | 134.95 | humidity | 50 | 10 | > th | dose independent | rect. | 9 | 5 |
| 572 | 135.25 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 15 |
| 586 | 135.38 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 604 | 135.51 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 606 | 135.52 | radiation | 40 | 10 | < th | dose independent | rect. | 12 | 21 |
| 613 | 135.55 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 639 | 135.77 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 654 | 135.86 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 679 | 136.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 680 | 136.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 697 | 136.15 | radiation | 1 | 270 | > th | dose dependent | sin | 8 | NA |
| 724 | 136.29 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 765 | 136.40 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 776 | 136.42 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 810 | 136.52 | temperature | 30 | 30 | > th | dose independent | rect. | 9 | 5 |
| 875 | 136.58 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 894 | 136.61 | radiation | 40 | 270 | < th | dose dependent | sin | 7 | NA |
| 904 | 136.65 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 908 | 136.66 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 946 | 136.78 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 947 | 136.79 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 953 | 136.80 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 5 |