Os05g0554000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0554000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.62 | 0.524 | 5.46 | -1.53 | 0.761 | -0.451 | -0.452 | -2.49 | 0.263 | 20.8 | 70.99 | 10407 | -- | -- |
| 129.97 | 0.531 | 5.47 | -1.31 | 0.756 | -0.539 | -0.508 | -- | 0.369 | 20.6 | 71 | 20396 | -- | -- |
| 124.91 | 0.521 | 5.45 | -1.55 | 0.772 | -0.311 | -- | -2.67 | 0.244 | 20.8 | 73.11 | 9382 | -- | -- |
| 130.49 | 0.532 | 5.45 | -1.29 | 0.734 | -0.597 | -- | -- | 0.4 | 20.7 | 70 | 20463 | -- | -- |
| 156.87 | 0.583 | 5.46 | -1.58 | -- | 0.0605 | -- | -2.99 | 0.0986 | -- | 75.05 | 8023 | -- | -- |
| 138.8 | 0.552 | 5.49 | -1.19 | 0.746 | -- | -0.492 | -- | 0.219 | 20.7 | -- | -- | -- | -- |
| 139.59 | 0.553 | 5.49 | -1.18 | 0.746 | -- | -- | -- | 0.219 | 20.8 | -- | -- | -- | -- |
| 161.94 | 0.593 | 5.44 | -1.28 | -- | -0.657 | -- | -- | 0.413 | -- | 73 | 20189 | -- | -- |
| 171.33 | 0.61 | 5.43 | -- | 0.777 | -0.442 | -- | -- | 0.515 | 20.7 | 81 | 18288 | -- | -- |
| 171.22 | 0.611 | 5.47 | -1.18 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 176.1 | 0.621 | 5.47 | -- | 0.749 | -- | -- | -- | 0.35 | 20.7 | -- | -- | -- | -- |
| 202.73 | 0.663 | 5.41 | -- | -- | -0.44 | -- | -- | 0.521 | -- | 81 | 18775 | -- | -- |
| 207.8 | 0.673 | 5.45 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 2 | 118.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 118.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 4 | 118.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 88 | 122.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 97 | 122.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 13 |
| 100 | 122.42 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 102 | 122.42 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 154 | 123.12 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 4 | NA |
| 156 | 123.13 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 4 | NA |
| 158 | 123.13 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 172 | 123.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 180 | 123.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 14 |
| 210 | 123.53 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 236 | 123.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 237 | 123.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 244 | 123.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 248 | 123.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 249 | 123.73 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 253 | 123.75 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 278 | 123.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 302 | 124.04 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 5 | NA |
| 311 | 124.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 312 | 124.11 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 313 | 124.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 324 | 124.18 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 342 | 124.25 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 362 | 124.34 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 367 | 124.38 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 402 | 124.60 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 409 | 124.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 426 | 124.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 458 | 124.79 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 478 | 124.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 489 | 124.88 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 503 | 124.92 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 526 | 124.99 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 528 | 125.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 532 | 125.02 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 551 | 125.12 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 556 | 125.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 557 | 125.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 582 | 125.19 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 592 | 125.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 604 | 125.24 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 613 | 125.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 643 | 125.33 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 10 |
| 669 | 125.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 685 | 125.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 692 | 125.46 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 694 | 125.46 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 772 | 125.61 | wind | 1.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 777 | 125.62 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 21 |
| 780 | 125.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 791 | 125.64 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 824 | 125.70 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 836 | 125.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 846 | 125.74 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 893 | 125.82 | humidity | 80.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 920 | 125.85 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 957 | 125.89 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 974 | 125.90 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |