Os05g0553800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Anti-silencing protein-like (Anti-silencing function 1b) (Anti- silencing factor 1-like protein).
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Os05g0553800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Anti-silencing protein-like (Anti-silencing function 1b) (Anti- silencing factor 1-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.4 | 0.259 | 8.29 | 1.44 | 0.137 | -0.695 | 0.0569 | 2.08 | 0.0578 | 12.1 | 25.8 | 1127 | -- | -- |
| 32.66 | 0.266 | 8.35 | 0.973 | 0.17 | -0.461 | 0.0667 | -- | -0.0563 | 12.5 | 26 | 2369 | -- | -- |
| 30.41 | 0.257 | 8.3 | 1.43 | 0.137 | -0.69 | -- | 2.02 | 0.0546 | 11.9 | 25.8 | 1126 | -- | -- |
| 31.49 | 0.261 | 8.36 | 0.985 | 0.16 | -0.489 | -- | -- | -0.0559 | 11.9 | 26.3 | 1128 | -- | -- |
| 31.28 | 0.26 | 8.3 | 1.43 | -- | -0.778 | -- | 2.15 | 0.0564 | -- | 25.64 | 1029 | -- | -- |
| 39.27 | 0.294 | 8.36 | 0.836 | 0.25 | -- | 0.0457 | -- | -0.0799 | 11.9 | -- | -- | -- | -- |
| 39.28 | 0.293 | 8.36 | 0.838 | 0.249 | -- | -- | -- | -0.0798 | 11.8 | -- | -- | -- | -- |
| 32.59 | 0.266 | 8.35 | 0.986 | -- | -0.567 | -- | -- | -0.045 | -- | 25.6 | 1036 | -- | -- |
| 54.82 | 0.345 | 8.38 | -- | 0.19 | -0.265 | -- | -- | -0.194 | 11.4 | 27.61 | 1127 | -- | -- |
| 43.19 | 0.307 | 8.36 | 0.83 | -- | -- | -- | -- | -0.083 | -- | -- | -- | -- | -- |
| 57.77 | 0.356 | 8.38 | -- | 0.239 | -- | -- | -- | -0.173 | 11.6 | -- | -- | -- | -- |
| 56.65 | 0.351 | 8.38 | -- | -- | -0.365 | -- | -- | -0.177 | -- | 26.4 | 1009 | -- | -- |
| 61.37 | 0.366 | 8.38 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.52 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 2 | 30.75 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 5 | 30.77 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 6 | 30.77 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 17 | 30.82 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 27 | 30.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 29 | 30.88 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 37 | 30.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 40 | 30.97 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 63 | 31.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 71 | 31.04 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 82 | 31.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 114 | 31.14 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 142 | 31.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 189 | 31.33 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 270 | 31.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 297 | 31.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 317 | 31.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 319 | 31.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 323 | 31.49 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 357 | 31.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 414 | 31.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 420 | 31.59 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 428 | 31.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 521 | 31.70 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 532 | 31.71 | radiation | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 565 | 31.73 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 582 | 31.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 594 | 31.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 650 | 31.78 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 653 | 31.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 722 | 31.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 836 | 31.88 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 850 | 31.89 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 959 | 31.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |