Os05g0553400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myb-related transcription factor-like protein (MYB transcription factor).
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Os05g0553400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myb-related transcription factor-like protein (MYB transcription factor).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 295.99 | 0.808 | 6.23 | 2.45 | 1.46 | -2.3 | -1.15 | 1.17 | 1.09 | 5.97 | 72.7 | 1446 | -- | -- |
| 297.7 | 0.804 | 6.24 | 2.37 | 1.46 | -2.18 | -1.13 | -- | 1.12 | 5.98 | 73.69 | 1449 | -- | -- |
| 298.85 | 0.805 | 6.22 | 2.43 | 1.42 | -2.26 | -- | 1.15 | 1.13 | 6.21 | 73.73 | 1492 | -- | -- |
| 300.6 | 0.807 | 6.23 | 2.35 | 1.43 | -2.17 | -- | -- | 1.13 | 6.18 | 74 | 1492 | -- | -- |
| 386.44 | 0.916 | 6.24 | 2.28 | -- | -2.17 | -- | 0.358 | 1.22 | -- | 78.02 | 781 | -- | -- |
| 418.67 | 0.959 | 6.19 | 1.96 | 1.4 | -- | -1.31 | -- | 1.33 | 6.13 | -- | -- | -- | -- |
| 422.58 | 0.963 | 6.19 | 1.95 | 1.4 | -- | -- | -- | 1.33 | 6.32 | -- | -- | -- | -- |
| 386.54 | 0.916 | 6.25 | 2.3 | -- | -2.16 | -- | -- | 1.23 | -- | 77.77 | 783 | -- | -- |
| 436.65 | 0.973 | 6.23 | -- | 1.5 | -1.87 | -- | -- | 1.13 | 6.09 | 90.48 | 1427 | -- | -- |
| 523.88 | 1.07 | 6.22 | 1.98 | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
| 522.54 | 1.07 | 6.24 | -- | 1.42 | -- | -- | -- | 1.12 | 6.24 | -- | -- | -- | -- |
| 500.16 | 1.04 | 6.25 | -- | -- | -2.19 | -- | -- | 1.17 | -- | 96 | 539 | -- | -- |
| 627.78 | 1.17 | 6.27 | -- | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 295.28 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 2 | 295.46 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 295.52 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 5 | 295.63 | humidity | 70 | 1440 | < th | dose dependent | sin | 19 | NA |
| 6 | 295.63 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 87 | 296.92 | humidity | 70 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 121 | 297.08 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 243 | 297.72 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 398 | 299.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 453 | 300.63 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 536 | 302.50 | humidity | 60 | 1440 | > th | dose independent | sin | 19 | NA |
| 559 | 303.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 561 | 303.04 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 577 | 303.37 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 584 | 303.45 | humidity | 60 | 1440 | < th | dose independent | sin | 19 | NA |
| 587 | 303.46 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 589 | 303.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 622 | 303.74 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 641 | 303.89 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 649 | 303.94 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 665 | 303.99 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 678 | 304.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 745 | 304.10 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 755 | 304.11 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 861 | 304.43 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |