Os05g0553300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0553300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.45 | 0.773 | 5.14 | 4.43 | 0.00533 | 60.2 | -1.94 | 126 | 0.0794 | 14.3 | 15 | 4239 | -- | -- |
| 296.48 | 0.808 | 3.08 | -0.649 | 0.0249 | -0.383 | 1.8 | -- | -0.0694 | 2.66 | 15 | 4239 | -- | -- |
| 282.83 | 0.783 | 5.14 | 4.41 | 0.159 | 60.3 | -- | 126 | 0.0741 | 7.98 | 14.98 | 4234 | -- | -- |
| 306.53 | 0.821 | 3.08 | -0.707 | 0.146 | -0.708 | -- | -- | -0.0849 | 7.38 | 14.98 | 4234 | -- | -- |
| 284.19 | 0.785 | 5.14 | 4.38 | -- | 59.9 | -- | 125 | 0.0711 | -- | 15 | 4234 | -- | -- |
| 296.76 | 0.808 | 3.08 | -0.632 | 0.0168 | -- | 1.83 | -- | -0.0653 | 2.58 | -- | -- | -- | -- |
| 307.5 | 0.821 | 3.08 | -0.68 | 0.151 | -- | -- | -- | -0.0778 | 7.67 | -- | -- | -- | -- |
| 307.39 | 0.817 | 3.09 | -0.729 | -- | -0.534 | -- | -- | -0.0888 | -- | 11.43 | 4723 | -- | -- |
| 294.23 | 0.799 | 3.03 | -- | 0.152 | 1.19 | -- | -- | 0.15 | 8.02 | 18.6 | 3825 | -- | -- |
| 308.73 | 0.821 | 3.08 | -0.678 | -- | -- | -- | -- | -0.0756 | -- | -- | -- | -- | -- |
| 319.68 | 0.836 | 3.06 | -- | 0.146 | -- | -- | -- | -0.0021 | 7.99 | -- | -- | -- | -- |
| 294.95 | 0.8 | 3.03 | -- | -- | 1.11 | -- | -- | 0.148 | -- | 18.7 | 3841 | -- | -- |
| 320.84 | 0.836 | 3.07 | -- | -- | -- | -- | -- | -0.000385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.54 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 4 | 266.57 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 5 | 266.72 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 6 | 266.82 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 16 | 267.30 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 19 | 267.51 | temperature | 15 | 4320 | > th | dose independent | rect. | 12 | 14 |
| 20 | 267.52 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 25 | 267.68 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 41 | 267.90 | temperature | 15 | 4320 | > th | dose independent | sin | 17 | NA |
| 43 | 267.94 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 73 | 268.50 | temperature | 15 | 4320 | < th | dose independent | sin | 17 | NA |
| 83 | 268.64 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 7 |
| 124 | 269.02 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 19 |
| 186 | 269.49 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 195 | 269.58 | temperature | 15 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 198 | 269.59 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 206 | 269.67 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 231 | 269.83 | temperature | 15 | 4320 | < th | dose dependent | sin | 19 | NA |
| 353 | 270.58 | temperature | 15 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 404 | 270.71 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 499 | 271.07 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 21 |
| 509 | 271.09 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 510 | 271.10 | temperature | 15 | 4320 | < th | dose independent | no | NA | NA |
| 522 | 271.16 | temperature | 15 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 529 | 271.19 | temperature | 15 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 558 | 271.35 | temperature | 15 | 4320 | > th | dose independent | no | NA | NA |
| 559 | 271.35 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 585 | 271.48 | temperature | 15 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 627 | 271.84 | temperature | 15 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 729 | 272.78 | temperature | 15 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 793 | 273.33 | temperature | 15 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 818 | 273.64 | temperature | 20 | 30 | < th | dose independent | rect. | 8 | 8 |
| 870 | 274.24 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 2 |
| 947 | 275.06 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 1 |
| 970 | 275.19 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 978 | 275.23 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 980 | 275.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 982 | 275.28 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 4 |
| 990 | 275.38 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |