Os05g0553000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14).
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Os05g0553000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.99 | 0.176 | 12.3 | -0.107 | 0.186 | 0.42 | 0.0993 | -0.735 | 0.00729 | 0.877 | 24.5 | 1491 | -- | -- |
| 14.63 | 0.178 | 12.3 | -0.331 | 0.214 | 0.364 | 0.0889 | -- | -0.0625 | 1.32 | 24.26 | 1385 | -- | -- |
| 14.03 | 0.174 | 12.3 | -0.108 | 0.186 | 0.421 | -- | -0.744 | 0.00771 | 0.865 | 24.52 | 1492 | -- | -- |
| 14.59 | 0.178 | 12.3 | -0.327 | 0.21 | 0.386 | -- | -- | -0.0498 | 0.521 | 22.5 | 2108 | -- | -- |
| 16.12 | 0.187 | 12.3 | -0.105 | -- | 0.417 | -- | -0.734 | 0.00801 | -- | 24.6 | 1543 | -- | -- |
| 19.16 | 0.205 | 12.3 | -0.471 | 0.172 | -- | 0.116 | -- | -0.201 | 0.585 | -- | -- | -- | -- |
| 19.22 | 0.205 | 12.3 | -0.475 | 0.171 | -- | -- | -- | -0.202 | 0.551 | -- | -- | -- | -- |
| 16.47 | 0.189 | 12.3 | -0.324 | -- | 0.357 | -- | -- | -0.08 | -- | 22 | 1768 | -- | -- |
| 16.29 | 0.188 | 12.3 | -- | 0.184 | 0.495 | -- | -- | -0.000952 | 0.085 | 21.77 | 5274 | -- | -- |
| 21.06 | 0.214 | 12.3 | -0.469 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 25.17 | 0.235 | 12.3 | -- | 0.164 | -- | -- | -- | -0.149 | 0.409 | -- | -- | -- | -- |
| 17.98 | 0.197 | 12.3 | -- | -- | 0.479 | -- | -- | -0.0433 | -- | 18.5 | 27876 | -- | -- |
| 26.87 | 0.242 | 12.3 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.81 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 2 | 13.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 6 | 13.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 19 | 13.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 20 | 13.97 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 28 | 13.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 34 | 14.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 38 | 14.03 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 58 | 14.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 66 | 14.10 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 79 | 14.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 81 | 14.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 104 | 14.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 121 | 14.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 144 | 14.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 158 | 14.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 190 | 14.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 202 | 14.26 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 203 | 14.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 228 | 14.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 253 | 14.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 270 | 14.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 293 | 14.33 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 356 | 14.36 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 578 | 14.48 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 674 | 14.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 685 | 14.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 686 | 14.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 742 | 14.56 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 750 | 14.56 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 751 | 14.56 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 755 | 14.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 770 | 14.57 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 781 | 14.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 807 | 14.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 813 | 14.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 837 | 14.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 852 | 14.61 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 912 | 14.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 929 | 14.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 954 | 14.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 989 | 14.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |