FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0552800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.051) R2 : 0.569
β1 : 0.864 (0.187) R2dD : 0.0208 R2D : 0.0232
β2 : 2.09 (0.142) R2dC : 0.251 R2C : 0.405
β3 : 2.23 (0.207) R2dE : 0.135 R2E : 0.294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.177 (0.109) R2dN8 : 0.00327 R2N8 : -0.00226
σ : 0.952
deviance : 417.98
__
_____
C
peak time of C : 8.31
E
wheather : wind
threshold : 2.435
memory length : 109
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.85
open length of G : 5.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
417.34 0.96 4.37 0.92 2.06 2.09 0.174 0.987 0.163 8.36 2.669 109 1.87 5.15
417.76 0.952 4.37 0.869 2.06 2.22 0.25 -- 0.174 8.3 2.48 109 1.85 5.18
417.23 0.951 4.36 0.939 2.1 2.13 -- 1.15 0.168 8.32 2.484 109 1.85 5.17
417.98 0.952 4.37 0.864 2.09 2.23 -- -- 0.177 8.31 2.435 109 1.85 5.18
456.44 0.995 4.52 0.451 -- 2.68 -- -0.0757 -0.0546 -- 13.64 153 1.8 9.23
492.75 1.04 4.36 1 2.89 -- 0.819 -- 0.141 7.37 -- -- -- --
494.58 1.04 4.36 1.02 2.89 -- -- -- 0.14 7.36 -- -- -- --
442.29 0.98 4.46 0.772 -- 2.72 -- -- 0.0461 -- 9.617 127 1.57 9.68
437.09 0.974 4.39 -- 2.1 2.39 -- -- 0.101 8.27 2.259 109 1.83 5.18
940.06 1.43 4.43 1.07 -- -- -- -- 0.187 -- -- -- -- --
521.93 1.07 4.38 -- 2.9 -- -- -- 0.0262 7.34 -- -- -- --
455.37 0.994 4.47 -- -- 2.84 -- -- -0.00968 -- 8.286 148 1.43 9.83
970.08 1.45 4.45 -- -- -- -- -- 0.069 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.58 wind 3.0 90 < th dose dependent rect. 2 5
2 420.86 wind 3.0 90 < th dose dependent rect. 2 9
4 421.34 wind 3.0 90 < th dose dependent rect. 2 7
10 422.13 atmosphere 1015.0 270 < th dose dependent rect. 1 4
19 424.68 atmosphere 995.0 10 > th dose independent rect. 6 11
26 426.14 atmosphere 995.0 90 > th dose independent rect. 6 10
31 426.44 precipitation 0.1 270 < th dose independent rect. 1 4
32 426.44 precipitation 0.1 270 < th dose dependent rect. 1 4
35 426.64 wind 7.0 270 < th dose independent rect. 18 7
43 427.09 wind 5.0 270 < th dose independent rect. 1 4
50 427.82 humidity 50.0 270 > th dose dependent rect. 1 4
56 428.03 temperature 10.0 270 > th dose independent rect. 5 9
58 428.03 atmosphere 1015.0 270 < th dose independent rect. 5 9
59 428.03 temperature 10.0 270 > th dose independent rect. 14 15
65 428.52 atmosphere 995.0 90 > th dose independent rect. 6 21
83 429.08 precipitation 0.1 270 < th dose independent rect. 5 9
84 429.08 precipitation 0.1 270 < th dose independent rect. 5 20
85 429.08 precipitation 0.1 270 < th dose dependent rect. 5 9
86 429.08 precipitation 0.1 270 < th dose dependent rect. 5 20
89 429.24 wind 1.0 270 < th dose independent rect. 2 3
93 429.63 radiation 1.0 270 < th dose independent rect. 1 4
95 429.64 temperature 10.0 270 > th dose independent rect. 1 4
97 429.64 temperature 30.0 270 < th dose independent rect. 1 4
98 429.64 humidity 50.0 270 > th dose independent rect. 1 4
101 429.64 atmosphere 995.0 270 > th dose independent rect. 1 4
102 429.64 atmosphere 1010.0 270 < th dose independent rect. 1 4
107 429.64 temperature 10.0 270 > th dose independent rect. 5 20
108 429.64 radiation 40.0 270 < th dose dependent rect. 1 4
109 429.65 radiation 20.0 270 < th dose dependent rect. 1 4
115 429.91 wind 9.0 270 < th dose independent rect. 5 9
117 429.97 wind 9.0 270 < th dose independent rect. 5 20
124 430.27 precipitation 0.1 270 < th dose independent rect. 14 15
125 430.27 precipitation 0.1 270 < th dose dependent rect. 14 15
126 430.31 wind 9.0 270 < th dose independent rect. 14 15
127 430.31 precipitation 0.1 270 < th dose independent rect. 1 17
128 430.31 precipitation 0.1 270 < th dose dependent rect. 1 17
149 431.03 atmosphere 995.0 10 > th dose independent rect. 6 20
150 431.05 wind 1.0 270 > th dose independent rect. 4 10
151 431.06 temperature 10.0 270 > th dose dependent rect. 1 4
155 431.22 wind 1.0 90 > th dose independent rect. 22 16
167 431.66 radiation 40.0 90 < th dose independent rect. 15 15
171 431.89 precipitation 0.1 270 < th dose independent rect. 18 7
172 431.89 precipitation 0.1 270 < th dose dependent rect. 18 7
212 432.88 humidity 70.0 90 > th dose dependent rect. 3 3
213 432.95 radiation 1.0 270 < th dose dependent rect. 18 7
217 433.02 radiation 10.0 270 < th dose independent rect. 18 7
221 433.12 temperature 10.0 90 > th dose dependent rect. 3 3
227 433.21 temperature 10.0 270 > th dose independent rect. 18 7
228 433.21 humidity 50.0 270 > th dose independent rect. 18 7
233 433.21 temperature 10.0 270 > th dose independent rect. 1 17
234 433.21 atmosphere 1015.0 270 < th dose independent rect. 1 17
235 433.21 temperature 10.0 270 > th dose dependent rect. 19 6
236 433.24 wind 9.0 270 < th dose independent rect. 1 17
238 433.30 humidity 90.0 90 > th dose independent rect. 3 3
243 433.41 radiation 1.0 270 < th dose dependent rect. 5 20
248 433.45 temperature 30.0 270 < th dose independent rect. 19 6
250 433.45 atmosphere 995.0 270 > th dose independent rect. 19 6
274 433.67 temperature 10.0 270 > th dose dependent rect. 20 4
326 434.22 precipitation 0.1 90 < th dose independent rect. 3 3
328 434.22 precipitation 0.1 90 < th dose dependent rect. 3 3
332 434.29 temperature 15.0 10 > th dose dependent rect. 3 3
339 434.48 temperature 25.0 90 < th dose independent rect. 3 3
342 434.52 wind 3.0 30 < th dose independent rect. 2 7
345 434.59 atmosphere 1010.0 90 < th dose dependent rect. 4 1
405 435.14 radiation 10.0 90 < th dose independent rect. 3 3
425 435.39 wind 1.0 270 > th dose independent rect. 4 21
440 435.62 precipitation 0.1 10 < th dose independent rect. 2 4
442 435.62 precipitation 0.1 10 < th dose dependent rect. 2 4
457 435.89 radiation 1.0 270 < th dose independent rect. 5 20
461 435.92 temperature 10.0 90 > th dose independent rect. 3 3
464 435.92 humidity 50.0 90 > th dose independent rect. 3 3
467 435.92 atmosphere 995.0 90 > th dose independent rect. 3 3
468 435.92 atmosphere 1010.0 90 < th dose independent rect. 3 3
484 436.09 precipitation 0.1 10 < th dose independent rect. 6 20
486 436.09 precipitation 0.1 10 < th dose dependent rect. 6 20
527 436.24 temperature 10.0 10 > th dose independent rect. 6 10
529 436.24 atmosphere 1015.0 10 < th dose independent rect. 6 10
530 436.24 temperature 10.0 10 > th dose independent rect. 16 14
531 436.24 radiation 40.0 10 < th dose independent rect. 16 14
535 436.26 wind 9.0 270 < th dose dependent rect. 18 7
540 436.33 radiation 10.0 10 < th dose independent rect. 2 4
556 436.56 precipitation 0.1 270 < th dose independent rect. 20 4
558 436.56 precipitation 0.1 270 < th dose dependent rect. 20 4
559 436.62 wind 1.0 90 < th dose independent rect. 2 10
571 436.64 radiation 40.0 90 < th dose dependent rect. 3 3
576 436.71 precipitation 0.1 10 < th dose independent rect. 6 10
577 436.71 precipitation 0.1 10 < th dose dependent rect. 6 10
618 436.97 humidity 50.0 270 > th dose independent rect. 5 9
619 436.98 wind 1.0 270 > th dose independent rect. 21 2
623 436.99 wind 1.0 90 > th dose independent rect. 6 9
630 437.08 humidity 50.0 10 > th dose independent rect. 6 20
635 437.11 humidity 60.0 270 > th dose dependent rect. 2 1
647 437.19 atmosphere 1015.0 270 < th dose independent rect. 5 20
667 437.33 wind 1.0 270 > th dose independent rect. 19 6
720 437.66 temperature 10.0 270 > th dose independent rect. 20 4
721 437.66 temperature 30.0 270 < th dose independent rect. 20 4
722 437.66 humidity 50.0 270 > th dose independent rect. 20 4
725 437.66 atmosphere 995.0 270 > th dose independent rect. 20 4
726 437.66 radiation 1.0 270 < th dose independent rect. 20 4
731 437.66 temperature 10.0 270 > th dose independent rect. 24 20
732 437.66 radiation 1.0 270 < th dose dependent rect. 20 4
743 437.69 atmosphere 1015.0 270 < th dose independent rect. 24 20
810 437.92 radiation 1.0 270 < th dose dependent rect. 1 8
813 437.95 wind 9.0 10 < th dose independent rect. 16 14
819 438.01 temperature 10.0 10 > th dose independent rect. 2 4
821 438.01 temperature 30.0 10 < th dose independent rect. 2 4
822 438.01 humidity 50.0 10 > th dose independent rect. 2 4
825 438.01 atmosphere 995.0 10 > th dose independent rect. 2 4
826 438.01 atmosphere 1010.0 10 < th dose independent rect. 2 4
831 438.01 temperature 10.0 10 > th dose independent rect. 6 20
882 438.23 atmosphere 1015.0 270 < th dose independent rect. 19 6
896 438.26 humidity 50.0 270 > th dose independent rect. 5 20
925 438.36 temperature 10.0 1440 > th dose independent rect. 7 10
928 438.36 temperature 10.0 1440 > th dose independent rect. 17 14
932 438.36 radiation 40.0 1440 < th dose independent rect. 17 14
968 438.54 wind 3.0 30 < th dose dependent sin 5 NA
974 438.59 wind 9.0 1440 < th dose independent rect. 3 4
975 438.59 temperature 10.0 1440 > th dose independent rect. 3 4
978 438.59 temperature 30.0 1440 < th dose independent rect. 3 4
982 438.59 humidity 50.0 1440 > th dose independent rect. 3 4
987 438.59 atmosphere 995.0 1440 > th dose independent rect. 3 4
988 438.59 radiation 40.0 1440 < th dose independent rect. 3 4
992 438.59 temperature 10.0 1440 > th dose independent rect. 7 20