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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0552700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0697) R2 : 0.301
β1 : -3.87 (0.383) R2dD : 0.551 R2D : -0.156
β2 : 0.887 (0.14) R2dC : 0.0663 R2C : -0.0275
β3 : 1.9 (0.203) R2dE : 0.23 R2E : -0.133
β4 : -3.44 (0.532) R2dD*C : 0.0693 R2D*C : 0.0109
β5 : -8.23 (1.27) R2dD*E : 0.239 R2D*E : -0.421
γ1 : -0.645 (0.145) R2dN8 : 0.058 R2N8 : -0.0714
σ : 1.07
deviance : 521.06
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_____
C
peak time of C : 12.1
E
wheather : temperature
threshold : 23.97
memory length : 1239
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.4
open length of G : 4.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
521.06 1.07 4.33 -3.87 0.887 1.9 -3.44 -8.23 -0.645 12.1 23.97 1239 13.4 4.4
585.52 1.13 4.15 -2.09 0.702 1.33 -2.44 -- -0.557 11.8 18.08 8365 13.6 4.04
566.19 1.11 4.32 -3.78 0.894 1.9 -- -6.94 -0.627 12.6 24.27 1268 13.2 4.87
593.49 1.13 4.1 -2.11 1.34 2.13 -- -- -0.356 13.4 15.9 1216 12.7 6.55
602.05 1.14 4.3 -3.69 -- 1.71 -- -6.75 -0.505 -- 25.16 1342 14.1 4.62
621.87 1.17 4.05 -1.44 0.562 -- -2.93 -- -0.0401 11.3 -- -- -- --
657.81 1.2 4.05 -1.55 0.586 -- -- -- -0.048 12.1 -- -- -- --
623.51 1.16 4.08 -2.04 -- 1.36 -- -- -0.115 -- 25.2 1543 16 2.02
677.87 1.21 4.04 -- 1.59 1.46 -- -- -0.00614 13.2 4.258 1061 15.4 3.22
679.39 1.22 4.07 -1.57 -- -- -- -- -0.0565 -- -- -- -- --
721.19 1.26 4.01 -- 0.607 -- -- -- 0.125 12.2 -- -- -- --
709.19 1.24 4.02 -- -- 1.19 -- -- -0.0235 -- 24.68 1564 17.1 0.623
744.36 1.27 4.03 -- -- -- -- -- 0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 536.98 temperature 25 1440 > th dose dependent rect. 12 4
5 537.58 temperature 25 1440 > th dose dependent rect. 13 1
12 539.02 temperature 25 1440 > th dose dependent rect. 12 11
13 539.12 temperature 25 1440 > th dose dependent rect. 12 19
18 539.31 temperature 25 1440 > th dose dependent rect. 15 1
75 543.06 temperature 25 1440 > th dose dependent sin 16 NA
126 546.87 humidity 80 43200 > th dose independent rect. 21 2
143 548.77 humidity 80 43200 < th dose independent rect. 21 2
150 548.92 wind 5 43200 > th dose dependent rect. 15 1
156 549.43 temperature 25 1440 > th dose dependent rect. 5 18
171 549.66 temperature 20 10 > th dose dependent rect. 16 18
179 549.72 wind 3 43200 > th dose dependent rect. 11 18
190 549.86 wind 1 43200 > th dose dependent rect. 10 5
205 549.97 temperature 25 1440 > th dose dependent rect. 20 23
212 550.02 temperature 25 1440 > th dose dependent no NA NA
234 550.17 wind 9 43200 < th dose dependent rect. 10 5
276 550.60 radiation 10 43200 > th dose independent rect. 10 3
290 550.79 wind 9 43200 < th dose dependent rect. 9 7
310 551.14 wind 5 43200 < th dose independent rect. 13 17
314 551.15 temperature 20 270 > th dose dependent rect. 14 19
315 551.16 radiation 10 43200 > th dose independent rect. 10 1
318 551.20 temperature 30 43200 > th dose dependent rect. 10 1
324 551.25 wind 9 43200 > th dose dependent rect. 13 19
326 551.26 temperature 30 43200 > th dose dependent rect. 8 4
357 551.48 wind 5 43200 > th dose independent rect. 13 17
380 551.60 temperature 30 43200 > th dose independent rect. 17 18
385 551.72 temperature 30 43200 > th dose independent rect. 9 2
396 551.77 temperature 30 43200 > th dose dependent sin 10 NA
415 551.81 temperature 30 43200 < th dose independent rect. 17 18
419 551.84 temperature 30 43200 < th dose independent rect. 9 2
423 551.89 temperature 30 43200 < th dose independent rect. 3 8
429 551.91 temperature 30 43200 < th dose independent rect. 21 14
442 551.94 temperature 25 43200 > th dose dependent rect. 23 1
463 552.07 humidity 80 43200 < th dose dependent rect. 21 2
491 552.18 humidity 80 43200 < th dose dependent rect. 20 6
535 552.29 wind 3 43200 > th dose dependent sin 22 NA
541 552.32 temperature 30 43200 > th dose independent sin 9 NA
553 552.36 temperature 30 43200 > th dose dependent rect. 16 1
574 552.42 temperature 30 43200 > th dose dependent rect. 15 3
575 552.42 temperature 25 43200 > th dose dependent rect. 23 7
578 552.43 temperature 25 1440 > th dose dependent rect. 15 23
579 552.44 temperature 30 43200 < th dose independent sin 9 NA
582 552.45 temperature 30 43200 > th dose independent rect. 17 1
607 552.50 temperature 25 43200 > th dose independent rect. 5 1
645 552.59 temperature 30 43200 < th dose independent rect. 17 1
651 552.60 wind 9 43200 > th dose independent rect. 13 21
672 552.64 temperature 30 43200 > th dose dependent no NA NA
674 552.64 temperature 30 43200 > th dose dependent rect. 8 10
885 552.79 temperature 20 270 > th dose dependent rect. 13 21
892 552.82 temperature 25 43200 > th dose independent rect. 3 1
894 552.82 wind 5 43200 > th dose dependent rect. 13 12
923 552.89 wind 9 43200 < th dose independent rect. 13 1
924 552.90 temperature 25 43200 > th dose dependent rect. 1 5
959 552.92 temperature 25 43200 < th dose independent rect. 5 1